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Kawanishi, K.

Publications and source records attributed to Kawanishi, K..

2 recordsLinked to original sources

Continuous Nuclear Export of p62/SQSTM1 Is Essential for Kidney Homeostasis

The selective autophagy receptor p62/SQSTM1 dynamically shuttles between the nucleus and cytoplasm through distinct nuclear localization and export signals, yet the physiological significance of this trafficking has remained unknown. Here, we generated mice carrying a deletion of the p62 nuclear export signal (dNES) to determine the in vivo role of p62 nuclear export. Homozygous dNES mice developed progressive podocyte injury, glomerulosclerosis, and fatal renal failure by 6-7 weeks of age, whereas heterozygous and dNES/- mice did not develop renal dysfunction. Loss of nuclear export caused constitutive nuclear accumulation of p62, accompanied by the formation of insoluble ubiquitin-positive aggregates and widespread alterations in the renal proteome, including activation of energy metabolism-related pathways and suppression of developmental programs. We previously demonstrated that the lipid peroxidation product 4-hydroxy-2-nonenal (4-HNE) inhibits the nuclear export receptor XPO1, resulting in nuclear retention of p62 in cultured cells. The present findings provide in vivo evidence that continuous nuclear export of p62 is indispensable for maintaining kidney homeostasis and reveal that excessive nuclear accumulation, rather than cytoplasmic depletion, underlies p62-mediated toxicity. Collectively, these findings establish continuous nuclear export of p62 as an essential mechanism for maintaining kidney homeostasis. Significance StatementThe adaptor protein p62/SQSTM1 continuously shuttles between the nucleus and cytoplasm, but the physiological significance of this trafficking has remained unknown. Here, we show that disrupting the nuclear export signal of p62 causes progressive podocyte injury, glomerulosclerosis, and fatal kidney failure through excessive nuclear accumulation and aggregate formation. In contrast, dNES/+ and dNES/- mice remain healthy, demonstrating that excessive nuclear accumulation, rather than cytoplasmic depletion, drives disease. These findings identify continuous nuclear export as a fundamental mechanism that prevents toxic nuclear accumulation of p62 and preserves kidney homeostasis.

cell biology↗

Comparative Evaluation of Glycoproteomics Software for Rare Glycopeptide Identification

Advancements in glycoproteomics software have improved glycopeptide identification; however, algorithm differences cause discrepancies in identified glycopeptide, even when identical datasets. We compared five state-of-the-art glycoproteomics software programs (Byonic, MSFragger-Glyco, pGlyco3, Glyco-Decipher, and GRable), investigating their unique capabilities, and examined their ability to identify rare sialic acid-containing glycopeptides (NeuGc and KDN) derived from BJAB-K20 cells, which lack UDP-N-acetylglucosamine 2-epimerase, the rate-limiting enzyme for sialic acid synthesis. Approximately half of the identified glycopeptides were unique to individual tools. Byonic identified the highest number of glycopeptides, whereas Glyco-Decipher and GRable identified complex highly branched glycan structures. NeuGc- and KDN-containing glycopeptides were identified by specific programs, highlighting their capability to handle rare glycan structures. To assess the reliability of these identifications, we reanalyzed the MS/MS spectra for the presence of diagnostic ions corresponding to each identified glycopeptide. Some software programs identified glycopeptides without detecting the corresponding diagnostic ions, raising concerns regarding result reliability. However, leveraging the distinct capabilities of each software enabled us to achieve a comprehensive and reliable analysis of glycopeptides, including those with rare glycan structures. Combining multiple glycoproteomics software programs with complementary strengths and incorporating post- verification steps, such as diagnostic ion analysis, enhances the accuracy and depth of glycopeptide identification.

biochemistry↗