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Karniski, C.

Publications and source records attributed to Karniski, C..

2 recordsLinked to original sources

Breathing in sync: how a social behavior structures respiratory epidemic risk in bottlenose dolphins

Dolphin morbillivirus has caused mass mortalities in dolphin populations globally. Given their role as ecosystem sentinels, mass mortalities among these populations can be detrimental. Morbillivirus is transmitted through respiratory droplets and occurs when dolphins breathe synchronously, a variable social behavior. To assess the role of variable social behavior on disease risk empirically, we collected behavioral data from two wild bottlenose dolphins populations (Tursiops spp.), developed network models that synthesize transmission contacts, and used an epidemiological model to predict disease consequences. We find that juveniles have more contacts than adults, adult males have more contacts than adult females, and that individuals preferentially contact others in their own demographic group. These patterns translate to higher infection risk for juveniles and adult males, which we support using data from a morbillivirus outbreak. Our work characterizes the impact of bottlenose dolphin social dynamics on infectious disease risk and informs the structure of vulnerability for future epizootics.

ecology↗

Resolving the unsolved: Comprehensive assessment of tandem repeats at scale

Tandem repeat (TR) variation is associated with gene expression changes and over 50 rare monogenic diseases. Recent advances in sequencing have enabled accurate, long reads that can characterize the full-length sequence and methylation profile of TRs. However, despite these advances in sequencing technology, computational methods to fully profile tandem repeats across the genome do not exist. To address this gap, we introduce tools for tandem repeat genotyping (TRGT), visualization and an accompanying TR database. TRGT accurately resolves the length and sequence composition of TR regions in the human genome. Assessing 937,122 TRs, TRGT showed a Mendelian concordance of 99.56%, allowing a single repeat unit difference. In six samples with known repeat expansions, TRGT detected all repeat expansions while also identifying methylation signals, mosaicism, and providing finer resolution of repeat length. Additionally, we release a database with allele sequences and methylation levels for 937,122 TRs across 100 genomes.

genomics↗