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Karia, P.

Publications and source records attributed to Karia, P..

3 recordsLinked to original sources

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Increasing drought threatens global agriculture, especially in water-limited regions. Sorghum bicolor, a drought-tolerant C4 grass, is a promising bioenergy crop for cultivation on marginal lands, yet its molecular drought responses remain poorly understood. To uncover single-cell-level transcriptional responses to drought, we performed single-nucleus RNA sequencing on mature sorghum leaves under well-watered and drought conditions. We identified major cell types and analyzed differential gene expression across mesophyll, bundle sheath, epidermal, vascular, and stomatal cells. Surprisingly, drought effects on transcriptomes exceeded differences due to cell identity, revealing a shared response across cell types. We leveraged this convergence to identify candidate regulators of drought-responsive gene expression. These findings advance our understanding of sorghum drought adaptation and offer new targets for engineering enhanced water use efficiency in bioenergy crops.

plant biology↗

Sorghum Metabolic Atlas: Large-Scale Mapping of Subcellular Enzyme Localization in Sorghum bicolor

Plant metabolism drives traits essential for productivity and resilience, yet understanding metabolic networks requires subcellular, cellular, and tissue-level spatial context that remains limited, particularly in crop species. Experimentally-derived subcellular localization data for enzymes are sparse, constraining analyses of metabolic organization in the cell. We developed a high-throughput protoplast transformation and fluorescent protein (FP) tagging system optimized for Sorghum bicolor, a climate-resilient C4 crop. Using this platform, we experimentally determined the subcellular localization of 234 metabolic enzymes spanning 184 pathways. The sorghum enzymes we characterized localize to 12 subcellular compartments. Comparison with computational predictions highlights variable accuracy across compartments, and cross-species comparison with Arabidopsis thaliana shows partial agreement with available experimental data. All data are accessible through the Sorghum Metabolic Atlas (www.sorghummetabolicatlas.org) web platform, enabling search, visualization, and download. This study presents a large-scale experimental dataset of enzyme localization in sorghum, providing a resource for studies of plant metabolic organization and comparative analyses.

plant biology↗

Phosphorylation of the mitochondrial triphosphate tunnel metalloenzyme TTM1 regulates programmed cell death in senescence

The role of mitochondria in programmed cell death (PCD) during animal growth and development is well documented, but much less is known for plants. We previously showed that the Arabidopsis thaliana triphosphate tunnel metalloenzyme (TTM) proteins TTM1 and TTM2 are tail-anchored proteins that localize in the mitochondrial outer membrane and participate in PCD during senescence and immunity, respectively. Here, we show that TTM1 is specifically involved in senescence induced by abscisic acid (ABA). Moreover, phosphorylation of TTM1 by multiple mitogen-activated protein kinases (MAPKs) regulates its function and turnover. A combination of proteomics and in vitro kinase assays revealed three major phosphorylation sites of TTM1 (S10, S437, and S490), which are phosphorylated upon perception of senescence cues such as ABA and prolonged darkness. S437 is phosphorylated by the MAP kinases MPK3 and MPK4, and S437 phosphorylation is essential for TTM1 function in senescence. These MPKs, together with three additional MAP kinases (MPK1, MPK7, and MPK6), phosphorylate S10 and S490, marking TTM1 for protein turnover, which likely prevents uncontrolled cell death. Taken together, our results show that multiple MPKs regulate the function and turnover of the mitochondrial protein TTM1 during senescence-related PCD, revealing a novel link between mitochondria and PCD. SummaryEmail addresses: purva.karia@mail.utoronto.ca

plant biology↗