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Kamijo, T.

Publications and source records attributed to Kamijo, T..

3 recordsLinked to original sources

Extensive clonal reproduction drives liana proliferation following forest fragmentation

Large-scale anthropogenic disturbances, including forest fragmentation, are increasing worldwide. Lianas often proliferate after such events, yet the mechanisms underlying these increases-- particularly their demographic sources--remain unclear. Here, we quantify the extent to which clonal expansion, rather than seed recruitment, accounts for post-disturbance proliferation of Wisteria floribunda (Fabaceae), the dominant liana in the study area. In a 21.6-ha fragmented forest landscape in Japan, we divided the study area into 20 x 20 m grid cells and randomly sampled up to one W. floribunda ramet per cell, and genotyped 273 ramets at 10 microsatellite loci to assign ramets to genets and quantify genet areas and their spatial distribution. Genotyping revealed a substantial contribution of extensive clonal reproduction: 94% of ramets were clonal, resolving into 47 genets. These genets collectively occupied 58% of the 21.6-ha study area, and expansion produced extensive genets--the largest covered 9.5 ha. Several genets spanned multiple forest patches; three multi-patch genets accounted for 43% of all ramets, including one spanning seven patches. Multi-patch genets were concentrated within areas covered by forests prior to fragmentation (odds ratio = 6.83; P < 0.001). These observations indicate that clonal expansion accounts for most post-disturbance proliferation, that some genets attain landscape-scale coverage in a fragmented forest, and that part of this dominance likely reflects legacy effects of genets established prior to fragmentation. Explicitly accounting for clonal contributions and genet spatial scale is critical for accurate prediction of disturbance-driven liana dynamics.

ecology↗

INCOMPATIBILITY GROUPS OF PSEUDOMONAS PLASMIDS REVISITED: COMPREHENSIVE ANALYSIS OF R-FACTORS AND THEIR REPLICONS

Plasmids are the most influential engines of bacterial evolution and horizontal gene transfer, fueling the global spread of traits such as antimicrobial resistance. Their deep evolutionary relationships, however, remain difficult to resolve because current classification schemes are constrained by host range and nucleotide similarity. Replication initiation proteins (RIPs), which govern plasmid persistence and diversification, also remain poorly annotated across public databases. Here we establish PInc, a curated and experimentally grounded replicon classification framework anchored in historically defined incompatibility groups of Pseudomonas plasmids. Homology searches beyond PInc revealed that most replication initiators analyzed here share a conserved winged-helix (WH) domain, defining a broad WH RIP superfamily. Using the conserved WH region, we reconstructed a large-scale phylogeny that linked WH RIPs to over 100,000 plasmids, representing approximately half of those analyzed across public databases. This phylogeny resolved eight major clades and the deep split between the single- and double-winged-helix superclades, while revealing clade-specific host and environmental distributions and substantial RIP diversity not captured by current typing tools or annotation schemes. Together, these results overcome the historical host bias of plasmid typing and provide a replication-centered view of plasmid diversification across bacterial lineages and environments.

microbiology↗

Clonal reproduction as a driver of liana proliferation following large-scale disturbances in temperate forests

Large-scale disturbances significantly impact forest dynamics, structure, and biodiversity. Lianas (woody vines) proliferate rapidly after such events, likely due to clonal reproduction. Understanding this process is challenging due to the need for precise disturbance history and accurate estimation of whether individuals originate from clonal reproduction, seed reproduction, or pre-existing vegetation. This study examines whether clonal reproduction drives liana proliferation following large natural disturbances. We analyzed the dominant liana species (Trachelospermum asiaticum var. asiaticum; Apocynaceae) in temperate forests on a volcanic island. The study included young forests recovering from a volcanic eruption 22 years ago and old-growth forests unaffected by eruptions for over 800 years. We established six 10 m x 10 m quadrats (three in each forest type), divided into 1 m - 1 m grids, and sampled 587 individuals. Genetic structure was assessed using 11 newly developed nuclear microsatellite markers. Significant clonal expansion was observed in both forest types, but stem density and genetic diversity varied markedly. Old-growth forests had 14 times more stem density and five times more genets (clones) than young forests, with greater genet intermingling and higher clonal diversity. This indicates that clonal reproduction results in high abundance and complex spatial genetic structures of the liana species in old-growth forests. Our analysis revealed that a few genets, newly recruited via seed dispersal in early succession stages, rapidly expanded through extensive clonal reproduction, leading to long-term liana proliferation. This study highlights the importance of understanding and quantifying clonality in predicting liana population dynamics after large-scale disturbances.

ecology↗