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Kakudji, E. V.

Publications and source records attributed to Kakudji, E. V..

2 recordsLinked to original sources

Nanoscale remodeling of mitochondrial architecture duringmtRNA surveillance failure

Mitochondria within a cell exhibit heterogeneity in their composition and metabolic functions, and how this specialization shapes the responses of individual organelles to stress is unclear. We applied fluorescence microscopy and in situ cryo-electron tomography to examine the composition of mitochondrial stress bodies and their relationship to inner mitochondrial membrane architecture in the context of a mitochondrial genome expression defect. We discovered that defective mitochondrial RNA processing prompted a loss of inner membrane domain identity, leading to the mislocalization of ATP synthase from cristae edges to the boundary membrane, perturbed cristae morphometrics, and complete cristae loss in a subset of organelles. Mitochondrial stress bodies were enriched with nucleic acid and protein components linked to oxidative pathways, while separate and distinct mitochondrial domains became enriched with oligomerized P5CS, a marker of reductive proline synthesis. We found that consolidation of mitochondrial RNA into stress bodies, as well as ATP synthase remodeling, were regulated independently from P5CS concentration into a subset of the mitochondria. We propose that stress compartmentalization enables independent tuning of the quality control of oxidative pathway components via spatial sequestration from the rest of the mitochondrial network.

cell biology↗

In situ cryo-ET visualization of mitochondrial depolarization and mitophagic engulfment

Defective mitochondrial quality control in response to loss of mitochondrial membrane polarization is implicated in Parkinsons disease by mutations in PINK1 and PRKN. Application of in situ cryo-electron tomography (cryo-ET) made it possible to visualize the consequences of mitochondrial depolarization at higher resolution than heretofore attainable. Parkin-expressing U2OS cells were treated with the depolarizing agents oligomycin and antimycin A (OA), subjected to cryo-FIB milling, and mitochondrial structure was characterized by in situ cryo-ET. Phagophores were visualized in association with mitochondrial fragments. Bridge-like lipid transporter (BLTP) densities potentially corresponding to ATG2A were seen connected to mitophagic phagophores. Mitochondria in OA-treated cells were fragmented and devoid of matrix calcium phosphate crystals. The intermembrane gap of cristae was narrowed and the intermembrane volume reduced, and some fragments were devoid of cristae. A subpopulation of ATP synthases re-localized from cristae to the inner boundary membrane (IBM) apposed to the outer membrane (OMM). The structure of the dome-shaped prohibitin complex, a dodecamer of PHB1-PHB2 dimers, was determined in situ by sub-tomogram averaging in untreated and treated cells and found to exist in open and closed conformations, with the closed conformation is enriched by OA treatment. These findings provide a set of native snapshots of the manifold nano-structural consequences of mitochondrial depolarization and provide a baseline for future in situ dissection of Parkin-dependent mitophagy.

cell biology↗