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Kabiraj, D.

Publications and source records attributed to Kabiraj, D..

2 recordsLinked to original sources

Comparative insights to the transportome of Nosema: a genus of parasitic microsporidians

Nosema, a genus of parasitic microsporidia, causes pebrine disease in arthropods, including economically important silkworms and honeybees. Nosema have gene-poor genomes shaped by loss of the metabolic pathways, as a consequence of continued dependence on host-derived substrates. As an act of counterbalance, they have developed an array of transporter proteins that allow stealing from their hosts. Here, we have identified the core set of twelve transporter families present in Nosema genus, viz. N. apis, N. bombycis, N. ceranae and N. antheraea through in silico pipeline. Transportomes of N. apis, N. bombycis, N. ceranae and N. antheraea have a dominant share of secondary carriers and primary active transporters. The comparatively rich and diverse transportome of N. bombycis indicates the role of transporters in its remarkable capability of host adaptation. The core set of transporter families of Nosema includes ones that have a likely role in osmo-regulation, intra- and extra-cellular pH regulation, energy compensation and self-defence mechanism. This study has also revealed a set of ten species-specific transporter families within the genus. To our knowledge, this is the first ever intra-genus study on microsporidian transporters. Both these datasets constitutes a valuable resource that can aid in development of inhibitor-based Nosema management strategies.

bioinformatics

Complete mitochondrial genome of golden silk producer Antheraea assamensis and its comparative analysis with other lepidopteran insects

Muga (Antheraea assamensis) is an economically important silkmoth endemic to North-eastern part of India and is the producer of the strongest known commercial silk. However, there is a scarcity of -omics data for understanding the organism at a molecular level. Our present study decodes the complete mitochondrial genome (mitogenome) of A. assamensis and presents comparative analysis with other lepidopterans. Mitogenome is a 15,272 bp long AT rich (~80.2%) molecule containing 37 genes (13 PCGs, 22 tRNAs, 2 rRNAs) and a 328 bp long control region. The overall mitogenome arrangement was similar to the other lepidopterans. Two PCGs cox1 and cox2 were found to have CGA and GTG as start codons respectively like some lepidopterans. Typical clover-leaf shaped secondary structures of tRNAs were found with a few exceptions such as unstable DHU and T{Psi}C loop in tRNASer1 and tRNATyr; significant number of mismatches (35) spread over 19 tRNAs. The control region contained a six bp deletion atypical of other Antheraea species. Phylogenetic position was consistent with the traditional taxonomic classification of Saturniidae. The complete annotated mitogenome is available in GenBank (Accession No. KU379695). To the best of our knowledge, this is the first report on complete mitogenome of A. assamensis.

evolutionary biology