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Kabir, A. H.

Publications and source records attributed to Kabir, A. H..

13 recordsLinked to original sources

Invasive Chinese tallow is associated with distinct rhizosphere microbial communities, core microbiomes, and functional potential relative to native Loblolly pine

Plant invasions frequently reshape belowground microbial communities, yet their effects on rhizosphere microbiome structure and function remain poorly understood. We compared the rhizosphere bacterial and fungal microbiomes of invasive Chinese tallow (Triadica sebifera) and native Loblolly pine (Pinus taeda) using 16S rRNA gene and ITS amplicon sequencing, together with microbial, functional, and soil analyses. Chinese tallow exhibited significantly greater bacterial and fungal richness and distinct microbial community composition than Loblolly pine. The invasive rhizosphere was enriched in plant-beneficial bacterial taxa, including Streptomyces, Bradyrhizobium, and Rhizobium, and ectomycorrhizal-associated fungi such as Russula and Cenococcum. This enrichment is consistent with enhanced nutrient acquisition, plant growth promotion, and stress tolerance, potentially favoring Chinese tallow establishment and persistence. Further, core microbiome and co-occurrence network analyses revealed extensive reorganization of persistent (Streptomyces, Russula) and highly connected microbial taxa that may be associated with Chinese tallow invasion. Functional predictions indicated greater representation of carbohydrate degradation, nitrogen fixation, plant growth promotion, nutrient mineralization, and ectomycorrhizal guilds in the Chinese tallow rhizosphere, whereas lignin degradation and saprotrophic or pathogen-associated fungal guilds were relatively more abundant under Loblolly pine. Soil physicochemical properties were also strongly correlated with dominant bacterial and fungal taxa, indicating that host-mediated microbial recruitment and environmental filtering jointly shaped rhizosphere community assembly. Overall, our findings identify rhizosphere microbiome reassembly as an important belowground feature associated with Chinese tallow invasion.

ecology↗

Variovorax paradoxus alters the root microbiome and alleviates bicarbonate-induced Fe limitation in cotton (Gossypium hirsutum L.) with enhanced benefits from bilateral root inoculation

Alkaline and calcareous soils can induce iron (Fe) limitation in plants, yet the responses of root-associated microbial communities to beneficial rhizobacteria under these conditions remain poorly understood in cotton. Here, we investigated the effects of Variovorax paradoxus on plant performance, Fe nutrition, and root microbiome dynamics in cotton exposed to bicarbonate-induced Fe limitation. In this study, V. paradoxus inoculation under bicarbonate-induced Fe limitation significantly improved photosynthetic parameters, growth parameters, and tissue Fe status. Interestingly, V. paradoxus partially suppressed the Fe-deficiency-induced increase in root ferric-chelate reductase activity without further increasing rhizosphere siderophore activity. This response suggests that improved Fe availability reduced the demand for maximal activation of the intrinsic Strategy I response. Despite improved plant health, V. paradoxus reduced root C levels, suggesting altered belowground carbon utilization associated with bacterial inoculation and stress conditions. Split-root experiments further showed that inoculating both root compartments showed substantially greater recovery than unilateral inoculation, indicating that broader root exposure to V. paradoxus enhanced the beneficial response. Although bacterial alpha diversity remained unchanged, V. paradoxus significantly altered bacterial community composition and enriched Cellvibrio together with the fungal taxa Funneliformis and Dominikia under Fe limitation. Exploratory analysis identified the plant-beneficial fungal hubs Funneliformis and Serendipita in the V. paradoxus-treated community under indirect Fe deficiency, along with the core genera Pseudomonas, Hydrogenophaga, and Funneliformis and the indicator taxa Shinella and Aquabispora. Spearman correlation analysis further associated Streptomyces with root Fe accumulation and biomass, while Epicoccum and Sordariales were positively associated with siderophore production in cotton exposed to bicarbonate-induced Fe limitation and inoculated with V. paradoxus. These findings demonstrate the potential of V. paradoxus and identify candidate microbial partners for microbiome-informed biofertilizers to improve Fe nutrition in cotton grown in calcareous soils.

plant biology↗

Localized co-inoculation of Bacillus subtilis and Trichoderma afroharzianum acts synergistically to reshape the root microbiome and improve plant performance in sorghum

Despite their agricultural potential, how bacterial-fungal consortia reshape root microbiomes and improve crop performance in sorghum remains poorly understood. Here, we investigated how individual and combined inoculation with Bacillus subtilis and Trichoderma afroharzianum influenced sorghum performance and root microbiome assembly. The in vitro co-culture assay demonstrated the compatibility of B. subtilis and T. afroharzianum as a microbial consortium. The B. subtilis-T. afroharzianum consortium demonstrated the highest CPPI (composite plant performance index) and shoot fresh weight in sorghum, while all inoculation treatments improved multiple growth and physiological traits. Split-root analysis demonstrated that bilateral root co-inoculation was necessary to maximize whole-plant growth benefits. Also, B. subtilis-T. afroharzianum co-inoculation increased carbon levels in both roots and leaves, accompanied by enhanced rhizosphere siderophore production consistent with improved nutrient status. In microbial community analysis, neither bacterial nor fungal alpha or beta diversity differed significantly among treatments; instead, inoculation selectively restructured root microbial communities. The B. subtilis-T. afroharzianum consortium selectively enriched plant growth-promoting Actinoplanes, siderophore-producing Enterobacter, and the plant-beneficial fungal genus Podospora. Co-occurrence network analysis identified Rhodoplanes, Serendipita, and Zopfiella among hub taxa associated with B. subtilis-T. afroharzianum co-inoculation, suggesting potential roles in microbial community connectivity and organization. Furthermore, the persistence of Streptomyces and Serendipita, particularly the latter, suggests the presence of a beneficial microbial core that may contribute to sustained rhizosphere functioning. In addition, Bacillus and Serendipita were among the indicator taxa associated with inoculated treatment combinations, suggesting that the inoculants selectively assembled a distinct plant-beneficial microbiome. Devosia was associated with chlorophyll content, siderophore production, and shoot height, whereas Serendipita correlated with shoot biomass under the B. subtilis-T. afroharzianum co-inoculation. Taken together, B. subtilis-T. afroharzianum consortium promotes sorghum growth by selectively reshaping the root microbiome, highlighting its potential as a next-generation microbial biofertilizer.

plant biology↗

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

AimsTrichoderma afroharzianum T22 is widely recognized for enhancing plant stress resilience, yet its effects in pea plants may vary depending on iron (Fe) availability. Methods and ResultsWe assessed the impact of T22 on pea grown under differential Fe status through integrated physiological and omics analyses. We found that the benefits of T22 are highly context dependent, providing significant improvements in photosynthesis and Fe/N accumulation under Fe deficiency but minimal effects under sufficiency. RNA-seq identified 262 DEGs under Fe deficiency and 555 DEGs under Fe sufficiency following T22 inoculation, with the latter primarily associated with basal metabolic functions, indicating potential colonization costs rather than adaptive responses. Particularly, T22 inoculation upregulated symbiosis-related genes (Nodule-specific GRPs, Major facilitator, sugar transporter-like), Fe transporters (NRAMPs, HMAs), and redox-associated genes (Glutathione S-transferase, Glutathione peroxidase) in the roots under Fe shortage, reflecting a coordinated response to enhance nutrient acquisition and stress tolerance. Microbiome profiling revealed that under Fe deficiency, T22 reshaped the root community by enriching several bacterial taxa such as Comamonadaceae, Pseudomonadaceae and Mitsuaria. These enriched bacterial taxa may act as potential helpers to T22 by providing complementary thereby amplifying its beneficial effects under Fe deficiency. In contrast, under Fe sufficiency, community restructuring was primarily limited to the enrichment of Rhizobiaceae, Pararhizobium. Fungal taxa showed minimal overall changes, with the exception of a significant enrichment of Paecilomyces in response to T22 under Fe-deficient soil conditions. ConclusionsThese findings indicate that T22 functions in a context-dependent manner, with bacterial enrichment varying with Fe availability, while fungal helper effects were not prominent following T22 inoculation in pea plants. Impact StatementBeneficial microbes do not function uniformly across environments. This study highlights how Fe availability determines whether Trichoderma acts as a strong mutualist or a neutral colonizer in pea plants. Our findings advance a precision bioinoculant framework for deploying microbial consortia specifically in Fe-deficient soils to enhance legume resilience and sustainable crop production.

plant biology↗

Bacillus subtilis reprograms host transcriptome and rhizosphere microbiome via systemic signaling to confer alkaline stress tolerance in garden pea

Soil alkalinity severely limits legume growth, but the role of Bacillus subtilis in alkaline stress tolerance remains unclear in garden pea. We found that multiple garden pea genotypes inoculated with B. subtilis under alkaline stress showed host-specific improvements in growth parameters. Mechanistic analysis conducted on Sugar Snap showed improved nodulation, mineral status, and photosystem efficiency, while split-root assays showed responses consistent with systemic effects of B. subtilis in alkaline tolerance. Further, FeEDDHA partially reduced alkaline stress symptoms but did not fully restore nodulation. In contrast, B. subtilis increased rhizosphere Fe-chelating activity and improved nodulation, leading to stronger symbiotic recovery than inorganic Fe alone. This suggests that factors associated with B. subtilis inoculation, beyond Fe availability alone, may contribute to the observed recovery of nodulation. This is further supported by in vitro co-culture experiments showing enhanced growth of R. leguminosarum in the presence of B. subtilis under alkaline conditions, indicating potential microbial compatibility for coping with stress. RNA-seq analysis identified 958 upregulated and 1,134 downregulated genes in roots inoculated with B. subtilis under alkaline conditions. The upregulated genes were mostly involved in the sugar-mediated symbiotic association (SWEET and GLUT), pH homeostasis (cation/H+ exchanger and ATPase), and nutrient assimilation (Ammonium transporter and Zn/Fe permease). Microbial community analysis revealed that B. subtilis significantly altered bacterial alpha diversity under alkaline stress, whereas fungal alpha diversity remained unaffected. Further, B. subtilis reshaped the rhizosphere microbial community and enriched taxa such as Pseudomonas, Pseudorhizobium, and Chaetomium, which were potentially associated with responses to alkaline stress. Taken together, microbial interventions such as B. subtilis offer an effective strategy to boost legume tolerance to alkaline soils.

plant biology↗

Iron retention coupled with trade-offs in localized symbiotic effects confers tolerance to combined iron deficiency and drought in soybean

Iron (Fe) and water availability are closely interlinked, with deficiencies in both adversely affecting soybean growth. However, the strategies employed by soybean to tolerate such conditions remain poorly understood. This study elucidates the interactions of host factors, and microbial associations using multi-omics approaches in Clark (tolerant) and Arisoy (sensitive) genotypes exposed to Fe deficiency and drought. Clark exhibited resilience to stress through sustained osmotic regulation, nutrient uptake, and photosynthetic activity, in contrast to Arisoy. Particularly, Fe retention in Clark, accompanied by the upregulation of ferritin-like proteins, may mitigate oxidative stress by reducing Fenton reactions. Furthermore, higher jasmonic and salicylic acid levels in Clark may contribute to its enhanced stress adaptation compared to Arisoy. RNA-seq analysis revealed 818 and 500 upregulated, along with 931 and 361 downregulated genes, in the roots of Clark and Arisoy, respectively, under stress. We observed the upregulation of symbiotic genes, such as Chalcone-flavonone isomerase 1 and SWEET10, accompanied by increased rhizosphere siderophore and root flavonoid in Clark. This indicates a significant role of microbes in mediating differential stress tolerance in soybean. Particularly, the combined stress led to distinct root and nodule microbiome dynamics, with Clark recruiting beneficial microbes such as Variovorax and Paecilomyces, whereas Arisoy exhibited the opposite pattern. In addition, Clark maintained nodule Bradyrhizobium and tissue nitrogen status, supported by ammonium retention and induction of Ammonium transporter 1 in the roots. Furthermore, in vitro compatibility between V. paradoxus and P. lilacinus suggests a synergistic interaction, with their localized signals benefiting Clark. Remarkably, enriched microbiomes significantly improved growth parameters, accompanied by elevated rhizosphere siderophore in sensitive genotypes under stress. This study is the first to uncover mechanisms of dual stress tolerance in soybean that may offer promising targets for breeding programs and microbiome-based biofertilizer strategies to improve combined stress tolerance in soybean and other legumes. HighlightIron retention coupled with symbiotic associations driven by the enrichment of Variovorax and Paecilomyces in the roots confers tolerance to combined iron deficiency and drought in soybean.

plant biology↗

Transcriptional Responses and Microbiome Shifts in Pea Roots Under High pH Stress

High soil pH severely impacts plant growth and productivity, yet the transcriptomic changes and microbial dynamics underlying stress adaptation in garden pea (Pisum sativum ssp. hortense) remain unclear. This study demonstrates that high soil pH leads to stunted growth, reduced biomass, impaired photosynthesis, and nutrient status in garden pea. Further, disruption in key nitrogen-fixing bacteria (Rhizobium indicum, R. leguminosarum, and R. redzepovicii), along with the downregulation of NifA and NifD genes and upregulation of NifH in nodules highlight the critical role of micronutrient balance in legume-microbe symbiosis and a compensatory response to maintain nitrogen status. RNA-seq analysis revealed extensive transcriptional reprogramming in roots, characterized by the upregulation of oxidative stress response genes (e.g., oxidoreductase and glutathione transferase activities, metal ion transporters) and the downregulation of genes related to ammonia-lyase activity and ion binding, reflecting broader disruptions in nutrient homeostasis. KEGG pathway analysis identified enrichment of MAPK signaling pathway, likely interacting with other pathways associated with stress tolerance, metabolic adjustment, and structural reorganization as part of adaptive responses to high pH. Root microbiome analysis showed significant enrichment of Variovorax, Shinella, and Chaetomium, suggesting host-driven recruitment under high pH stress. Stable genera such as Pseudomonas, Novosphingobium, Mycobacterium, Herbaspirillum, and Paecilomyces displayed resilience to stress conditions, potentially forming core microbiome components for adaptation to high pH. In a targeted study, inoculation of plants with an enriched microbiome, particularly C. globosum, under high pH conditions improved growth parameters and increased the abundance of Stenotrophomonas and Pseudomonas in the roots. It suggests that these bacterial genera may act as helper microbes to C. globosum, collectively promoting stress resilience in pea suffering from high pH. These findings provide a foundation for microbiome-aided breeding programs and the development of microbial consortia to enhance the adaptation of pea plants to high pH conditions.

plant biology↗

Fe deficiency causes transcriptional shift in roots leading to disruption of drought tolerance in soybean

Soil alkalinity and drought collectively cause severe growth retardation in crops. However, the adaptive responses and transcriptional changes under such conditions remain unclear in soybean. In this growth incubator study, soil alkalinity and drought stress led to significant reductions in plant biomass, chlorophyll, and nutrient uptake in soybean. However, the photochemical efficiency of photosystem II remained stable, suggesting the activation of protective mechanisms to maintain photosynthetic functions. RNA-seq analysis demonstrated 357 upregulated and 799 downregulated genes in roots due to combined soil alkalinity and drought. Analysis revealed a complex response, with upregulation of genes predominantly involved in mineral homeostasis (Iron dehydrogenase, Sulfurylase), reactive oxygen species scavenging (Glutamate synthase, L-Ascorbate peroxidase) and hormonal signaling. Particularly, several ethylene-responsive genes, including the Transcription factors TF5 and TF018, were upregulated, indicating the activation of stress-related signaling pathways. In a targeted study, plants supplemented with an ethylene precursor showed significant improvements in morpho-physiological traits and Fe status under combined stress. However, ethylene precursor applied in non-stressed plants led to reduced growth, and Fe levels, suggesting an involvement of the context-dependent role of ethylene in promoting stress tolerance. Furthermore, ethylene precursors caused an increase in root flavonoid and rhizosphere siderophore while restoring bacterial and fungal microbial cells in roots under combined stress in soil. However, in healthy plants, flavonoid and siderophore levels decreased, accompanied by a reduction in microbial cells to control levels. This suggests that elevated ethylene may regulate root exudates to recruit microbes dominated by host response, aiding soybean plants cope with combined stresses, although this effect may not occur in non-stressed plants. This is the first report on the transcriptional response and physiological adjustments in soybean exposed to alkalinity and drought, potentially advancing knowledge for genetic and agronomic interventions to improve stress resilience in legume crops.

plant biology↗

Iron-induced Transcriptional and Microbiome Changes in Host Roots Associated with Drought Tolerance in Sorghum

Drought stress significantly impairs growth, and microbial interactions in sorghum. This study explores the transcriptional and microbial shifts in sorghum under drought, revealing key adaptations to water deficit. LC-MS (Liquid Chromatography-Mass Spectrometry) analyses revealed that drought stress induced abscisic acid while significantly reducing jasmonic acid levels in sorghum roots, likely due to resource conservation strategies during drought. Transcriptional reprogramming highlighted the upregulation of genes in the roots involved in mineral homeostasis (Ferritin 1, Iron dehydrogenase, Nitrate transporter 1), hormone signaling (Ethylene-insensitive protein 3, Gibberellin 2-oxidase), and osmotic regulation (Aquaporin, Dehydrin), underlining key adaptive responses to maintain nutrient uptake, redox status, and cellular turgor. In Fe-supplemented plants, increased Fe in roots correlated with increased Ferritin 1 expression, improved plant health, and reduced Fenton reaction rate and H O levels. This suggests that ferritin helps minimize oxidative stress under drought in sorghum. Drought reduced root-associated bacterial diversity and richness while enriching drought tolerance-associated genera, such as Burkholderia, Caballeronia and Paraburkholderia, known for promoting plant growth through auxin production, phosphate solubilization, and siderophore-mediated iron acquisition. In contrast, fungal diversity and richness remained unchanged, dominated by Talaromyces, which showed a statistically non-significant increase under drought. Random forest models could not identify functional predictors for fungi but revealed a shift in bacterial functional groups under drought, with enrichment in phototrophy, methylotrophy, and nitrate reduction, traits emphasizing microbial roles in nutrient cycling and drought adaptation of sorghum. This study provides insights into the role of ferritin and potential bacterial bioinoculants that could enhance sorghum resilience to drought. Future research should validate these findings to integrate them into breeding programs and biofertilizer formulation for drought-tolerant sorghum and climate-resilient agriculture.

plant biology↗

Trichoderma afroharzianum induces rhizobia and flavonoid through systemic signaling to combat iron deficiency in garden pea

Iron (Fe) deficiency is a limiting factor for legumes, yet the role of beneficial fungi in mitigating Fe deficiency in garden pea is understudied. In this study, Trichoderma afroharzianum T22 colonized the roots of garden pea cultivars exposed to alkaline-exposed Fe-deficiency in a host-specific manner. In Fe-deficient Sugar Snap, T22 improved growth parameters, consistent with increased tissue mineral content, particularly Fe and Mn, as well as enhanced rhizosphere siderophore levels. The split-root assay demonstrated that the beneficial effects of T22 on Fe deficiency mitigation are the result of a whole-plant association rather than localized root-specific effects. RNA-seq analysis showed 575 and 818 differentially expressed genes upregulated and downregulated in the roots inoculated with T22 under Fe deficiency. The upregulated genes were mostly involved in the flavonoid biosynthetic pathway (monooxygenase activity, ammonia-lyase activity, 4-coumarate-CoA ligase), along with genes related to mineral transport and redox homeostasis. Further, a flavonoid precursor restored plant health even in the absence of T22, confirming the role of microbial symbiosis in mitigating Fe deficiency. Interestingly, T22 restored the abundance of rhizobia, particularly Rhizobium leguminosarum and Rhizobium indicum, along with the induction of NifA, NifD, and NifH in nodules, suggesting a connection between T22 and rhizobia under Fe-starvation. Further, the elevated rhizosphere siderophore, root flavonoid, expression of PsCoA (4-coumarate-CoA ligase) as well as the relative abundance of TaAOX1 and R. leguminosarum diminished when T22 was substituted with exogenous Fe. This suggests that exogenous Fe eliminates the need for microbiome-driven Fe mobilization, while T22-mediated Fe mitigation depends on flavonoid-driven symbiosis and R. leguminosarum abundance. It was further supported by the positive interaction of T22 on R. leguminosarum growth in Fe-deficient media. Thus, the beneficial effect of T22 on rhizobia likely stems from their interactions, not just improved Fe status in plants. This study provides the first mechanistic insights into T22 interactions with host and rhizobia, advancing microbiome strategies to alleviate Fe deficiency in peas and other legumes.

plant biology↗

Genome Wide Association Studies on 7 Yield-relatedTraits of 183 Rice Varieties in Bangladesh

MotivationRice genetic diversity is regulated by multiple genes and is largely dependent on various environmental factors. Uncovering the genetic variations associated with the diversity in rice populations is the key to breed stable and high yielding rice varieties. ResultsWe performed Genome Wide Association Studies (GWAS) on 7 rice yielding traits (grain length, grain width, grain weight, panicle length, leaf length, leaf width and leaf angle) based on a population of 183 rice landraces of Bangladesh. Our GWA studies reveal various chromosomal regions and candidate genes that are associated with different traits in Bangladeshi rice varieties. Noteworthy was the recurrent implication of chromosome 10 in all three grain shape related traits (grain length, grain width, and grain weight), indicating its pivotal role in shaping rice grain morphology. Our study also underscores the involvement of transposon gene families across these three traits. For leaf related traits, chromosome 10 was found to harbor regions that are significantly associated with leaf length and leaf width. The results of these association studies support previous findings as well as provide additional insights into the genetic diversity of rice. ConclusionsThis is the first known GWAS study on various yield-related traits in the varieties of Oryza sativa available in Bangladesh - the fourth largest rice-producing country. We believe this study will accelerate rice genetics research and breeding stable high-yielding rice in Bangladesh.

bioinformatics↗

In silico characterization of MTP1 gene associated with Zn homeostasis across different dicot plant species

Zinc (Zn) is tightly regulated in plants. The MTP1/ZAT (metal tolerance protein) plays a critical role in adjusting Zn homeostasis upon Zn fluctuation in plants. This study characterizes MTP1 homologs with particular emphasis on AtMT1 in various dicot plants. The protein BLAST search was used to identify a total of 21 MTP1 proteins. Generally, all these MTP1 proteins showed around 400 residues long, six transmembrane helices, stable instability index along with cation transmembrane transporter activity (GO:0008324). These physio-chemical features of MTP1 can be utilized as a benchmark in the prediction of Zn uptake and tolerance in plants. These MTP1 homologs were located on chromosomes 2, 7, and 14 with one exon. Motif analysis showed conserved sequences of 41-50 residues belonging to the family of cation efflux, which may be helpful for binding sites targeting and transcription factor analysis. Phylogenetic studies revealed close similarities of AtZAT with Glycine max and Medicago trunculata that may infer a functional relationship in Zn tolerance or uptake across different plant species. Further, interactome analysis suggests that AtZAT is closely linked cadmium/zinc-transporting ATPase and ZIP metal ion transporter, which could provide essential background for functional genomics studies in plants. The network of AtZAT is predominantly connected to cadmium/zinc-transporting ATPase (HMA2, HMA3, HMA4), cation efflux protein (MTP11), and metal tolerance protein C3 (AT4G58060). The Genevestigator platform further predicts the high expression potential of AtMTP1 in root tissue at the germination and grain filling stage. The structural analysis of MTP1 proteins suggests the conserved N-glyco motifs as well as similar hydrophobicity, net charge and nonpolar residues, alpha-helix in all MTP1 proteins. Altogether, these in silico characterization features of MTP1 and its orthologs will provide an essential theoretical background to perform wet-lab experiments and to better understand Zn homeostasis aiming to develop genetically engineered plants.

plant biology↗

In silico characterization and expression profiles of zinc transporter-like (LOC100037509) gene of tomato

Zinc (Zn) is an essential microelement for plants. ZIP transporters play a critical role in Zn homeostasis in plants. This in silico study characterizes different characteristics of putative Zn transporter of tomato (Solyc07g065380) and its homologs. A total of 10 ZIP protein homologs were identified across nine plant species by protein BLAST. All these ZIP protein homologs located at chromosome 7 showed 305-350 amino acid residues, 7-8 transmembrane helices, and stable instability index. Further, these ZIP protein homologs are localized in the plasma membrane at the subcellular level corresponding to the ZIP zinc transporter (PF02535) domain. Gene organization analysis reveals the presence of 3 exon along with the position of the promoter, TATA-box, transcriptional start site, and splice sites in these ZIP transporter homologs, in which tomato ZIP transporter (NM_001247420.1) contains a promoter, TATA-box, transcriptional start site at 500, 911 and 946 bp, respectively along with several splice sites, which may be useful for targeting binding sites and transcription factor analysis. Further, the cutting sites and restriction enzymes of each ZIP gene homologs might be helpful for future transgenic studies underlying Zn homeostasis. MEMO displayed five conserved motifs associated with the ZIP zinc transporter, N-glycosylation site, and phosphorylation site. Phylogenetic studies reveal a closet relationship of Solyc07g065380 with Solanum pennellii homolog, while ZIP transporter of Nicotiana sylvestris and Nicotiana tabacum predicted to be in close connection. The Solyc07g065380 transporter is predominantly linked to several uncharacterized zinc metal ion transporters and expressed in diverse anatomical part, developmental stage, and subjected to pathogen and heat stress. The secondary structural prediction reveals unique signal peptide in the ZIP protein homologs of S. lycopersicum and S. pennellii along with extended alpha-helix. These bioinformatics analyses might provide essential background to perform wet-lab experiments and to understand Zn homeostasis for the development of Zn-biofortified crops. Key message{diamondsuit} ZIP protein homologs are localized in the plasma membrane and are linked to ZIP zinc transporter (PF02535) domain at chromosome 7. {diamondsuit}ZIP protein motifs are associated with the ZIP zinc transporter, N-glycosylation site, and phosphorylation site. {diamondsuit}Phylogenetic studies reveal a closet relationship of Solyc07g065380 with Solanum pennellii homolog. {diamondsuit}ZIP protein homologs of S. lycopersicum and S. pennellii show unique signal peptide along with extended alpha-helix.

physiology↗