Biology subjects

Jones, C. W.

Publications and source records attributed to Jones, C. W..

3 recordsLinked to original sources

bioRxiv2025

Investigating high pathogenicity avian influenza virus incursions to remote islands: Detection of H5N1 on Gough Island in the South Atlantic Ocean

Understanding the mechanisms underlying the emergence and spread of high pathogenicity avian influenza virus (HPAIV) is critical for tracking its global dissemination, particularly via migratory seabirds, given their role in transmission over long distances. Scavenging seabirds, such as skuas, may act as both reservoirs and vectors, and have been linked to multiple outbreaks since 2021. Here, we report the detection of HPAIV H5N1 clade 2.3.4.4b in three Tristan skua (Stercorarius antarcticus hamiltoni) carcasses on Gough Island in the central South Atlantic Ocean. To investigate potential incursion routes, we combined genomic analyses with year-round tracking data from global location sensors. Although migratory movement patterns suggested southern Africa as the most obvious pathway, the strain detected on Gough Island was more closely related to that identified in South Georgia, indicating that infection may have occurred during the pre-laying exodus, when skuas disperse into frontal waters south of the island. No further cases have been confirmed for Gough, but more systematic monitoring is needed to understand the dynamics of virus infection. The detection of HPAIV H5N1 in skuas on Gough Island highlights the importance of continued vigilance, proactive and geographically inclusive surveillance strategies, and biosecurity measures globally, alongside efforts to reduce other pressures on globally important seabird populations to help strengthen their resilience.

pathology↗

bioRxiv2020

Mouse eradication is required to prevent local extinction of an endangered seabird on an oceanic island

Petrels (Procellariidae) are a highly diverse family of seabirds, many of which are globally threatened due to the impact of invasive species on breeding populations. While predation by invasive cats and rats has led to the extinction of petrel populations, the impact of invasive house mice Mus musculus is slower and less well documented. However, mice impact small burrow-nesting species such as MacGillivrays prion Pachyptila macgillivrayi, a species classified as endangered because it has been extirpated on islands in the Indian Ocean by introduced rodents. We use historic abundance data and demographic monitoring data from 2014 to 2020 to predict the population trajectory of MacGillivrays prion on Gough Island with and without a mouse eradication using a stochastic integrated population model. Given very low annual breeding success (0.01 fledglings per breeding pair in poor years (83%) or 0.38 in good years (17%), n = 320 nests over 6 years) mainly due to mouse predation, our model predicted that the population collapsed from ~3.5 million pairs in 1956 to an estimated 175,000 pairs in 2020 despite reasonably high adult survival probability ({phi} = 0.901). Based on these parameters, the population is predicted to decline at a rate of 9% per year over the next 36 years without a mouse eradication, with a 31% probability that by 2057 the MacGillivray prion population would become extremely vulnerable to extinction. Our models predict population stability ({lambda} = 1.01) and a lower extinction risk (<10%) if mouse eradication on Gough Island restores annual breeding success to 0.519, which is in line with that of closely-related species on predator-free islands. This study demonstrates the devastating impacts that introduced house mice can have on small burrowing petrels and highlights the urgency to eradicate invasive mammals from oceanic islands.

ecology↗

bioRxiv2016

Ribo-attenuators: novel elements for reliable and modular riboswitch engineering

Riboswitches are structural genetic regulatory elements that directly couple the sensing of small molecules to gene expression. They have considerable potential for applications throughout synthetic biology and bio-manufacturing as they are able to sense a wide range of small molecules and regulate gene expression in response. Despite over a decade of research they have yet to reach this considerable potential as they cannot yet be treated as modular components. This is due to several limitations including sensitivity to changes in genetic context, low tunability, and variability in performance. To overcome the associated difficulties with riboswitches, we have designed and introduced a novel genetic element called a Ribo-attenuator in Bacteria. This genetic element allows for predictable tuning, insulation from contextual changes, and a reduction in expression variation. Ribo-attenuators allow riboswitches to be treated as truly modular and tunable components, and thus increases their reliability for a wide range of applications.

synthetic biology↗