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Johnson, J. K.

Publications and source records attributed to Johnson, J. K..

2 recordsLinked to original sources

Epigenetic bookmarking of H2S exposure in Caenorhabditis elegans

Physiological memories of environmental stress can serve to predict future environmental changes, allowing the organism to initiate protective mechanisms and survive. Although physiological memories, or bookmarks, of environmental stress have been described in a wide range of organisms, from bacteria to plants to humans, the mechanism by which these memories persist in the absence of stress is still largely unknown. We have discovered that C. elegans transiently exposed to low doses of hydrogen sulfide (H2S) survive subsequent exposure to otherwise lethal H2S concentrations and induce H2S-responsive transcripts more robustly than naive controls. H2S bookmarking can occur at any developmental stage and persists through cell divisions and development but is erased by fasting. We show that maintenance of the H2S bookmark requires the SET-2 histone methyltransferase and the CoREST-like demethylase complex. We propose a model in which exposure to low doses of H2S generates a long-lasting, epigenetic memory by modulating H3K4me2 modifications at specific promoters. Understanding the fundamental aspects of H2S bookmarking in this tractable system can provide mechanistic insight into how environmental exposures are translated into the epigenetic landscape in animals.

genetics

Single-cell membrane potential fluctuations evince network scale-freeness and quasicriticality

What information single neurons receive about general neural circuit activity is a fundamental question for neuroscience. Somatic membrane potential fluctuations are driven by the convergence of synaptic inputs from a diverse cross-section of upstream neurons. Furthermore, neural activity is often scale-free implying that some measurements should be the same, whether taken at large or small scales. Together, convergence and scale-freeness support the hypothesis that single membrane potential recordings carry useful information about high-dimensional cortical activity. Conveniently, the theory of \"critical branching networks\" (a purported explanation for scale-freeness) provides testable predictions about scale-free measurements which are readily applied to membrane potential fluctuations. To investigate, we obtained whole-cell current clamp recordings of pyramidal neurons in visual cortex of turtles with unknown genders. We isolated fluctuations in membrane potential below the firing threshold and analyzed them by adapting the definition of \"neuronal avalanches\" (spurts of population spiking). The membrane potential fluctuations we analyzed were scale-free and consistent with critical branching. These findings recapitulated results from large-scale cortical population data obtained separately in complementary experiments using microelectrode arrays (previously published (Shew et al., 2015)). Simultaneously recorded single-unit local field potential did not provide a good match; demonstrating the specific utility of membrane potential. Modeling shows that estimation of dynamical network properties from neuronal inputs is most accurate when networks are structured as critical branching networks. In conclusion, these findings extend evidence for critical branching while also establishing subthreshold pyramidal neuron membrane potential fluctuations as an informative gauge of high-dimensional cortical population activity.

neuroscience