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Jönsson, H.

Publications and source records attributed to Jönsson, H..

3 recordsLinked to original sources

Anisotropic growth is achieved through the additive mechanical effect of material anisotropy and elastic asymmetry

Fast directional growth is a necessity for the young seedling: after germination, the seedling needs to quickly reach through the soil to begin its autotrophic life. In most dicot plants, this rapid escape is due to the anisotropic elongation of the hypocotyl, the columnar organ between the root and the shoot meristems. Such anisotropic growth is common in many plant organs and is canonically attributed to cell wall anisotropy produced by oriented cellulose fibers in the cell wall. More recently, a mechanism based on asymmetric cell wall elasticity has been proposed, produced by differential pectin biochemistry. Here we present a harmonizing model for anisotropic growth control in the dark-grown Arabidopsis hypocotyl: basic anisotropic information is provided by cellulose orientation (proxied by microtubules) and additive anisotropic information is provided by pectin-based elastic asymmetry in the epidermis. We demonstrate that hypocotyl growth was always anisotropic with axial and transverse walls growing differently, from germination. We present experimental evidence for pectin biochemical differences and wall mechanics underlying this differential growth. We demonstrate that pectin biochemical changes control the transition to rapid growth characteristic of Arabidopsis hypocotyl elongation, and provide evidence for a substantial mechanical role for pectin in the cell wall when microtubules are compromised. Lastly, our in silico modelling experiments indicate an additive combination for pectin biochemistry and cellulose orientation in promoting anisotropic growth.

plant biology

MoonFit, a minimal interface for fitting ODE dynamical models, bridging simulation by experimentalists and customization by C++ programmers

The modelling of biological systems often consists into differential equation models that need to be fitted to experimental data. During this complex process, the practical experience of the biologist and the theoretical abstraction of the modeller require back-and-forth refinements of the model, design of new experiments and inclusion of more data-points into the fitting procedure. Available optimization interfaces rarely simultaneously allow customizations by the programmer and the capacity for the biologist to perform simulations or optimizations with a simple interface.\n\nHere, we provide the C++ code of a graphical user interface based on a user defined minimal C++ ODE model class. The graphical interface allows to perform simulations and optimizations without any knowledge in programming. The code was designed minimal and modular to be easily modified, with maximal freedom to link customized optimization libraries, solver or hand-made scripts. Moonfit is powerful enough to fit and compare models with high dimensionality, multiple datasets, to automatize optimizations, and to perform iterative fittings using data interpolation. We believe this will ease the interaction between modellers and experimental partners.\n\nAvailability: Moonfit is freely available via c++ source code and accompanying scripts from gitlab.com/Moonfit/MoonLight.

systems biology

A model of protein interactions for regulating plant stem cells

The plant shoot apical meristem holds a stem cell niche from which all aerial organs originate. Using a computational approach we show that a mixture of monomers and heterodimers of the transcription factors WUSCHEL and HAIRY MERISTEM is sufficient to pattern the stem cell niche, and predict that immobile heterodimers form a regulatory pocket surrounding the stem cells. The model achieves to reproduce an array of perturbations, including mutants and tissue size modifications. We also show its ability to reproduce the recently observed dynamical shift of the stem cell niche during the development of an axillary meristem. The work integrates recent experimental results to answer the longstanding question of how the asymmetry of expression between the stem cell marker CLAVATA3 and its activator WUSCHEL is achieved, and recent findings of plasticity in the system.

plant biology