bioRxiv Science⌕ Search

Biology subjects

Jijumon, A. S.

Publications and source records attributed to Jijumon, A. S..

2 recordsLinked to original sources

Cytosolic factors govern vimentin network architecture and mechanics

Vimentin intermediate filaments are key cytoskeletal components forming networks with architectures distinct from other intermediate filament types, enabling specialized functions. Although assembly of individual filaments from soluble subunits is well characterized, dissecting how vimentin networks are organized has been challenging, as existing in vitro systems do not mimic the structures observed in cells. Thus, how cells establish higher-order vimentin organization remains unclear. Here, we reconstitute cell-like vimentin networks in vitro, using purified vimentin and extracts from mammalian and non-mammalian cells. Systematic variation of parameters reveals that cytosolic biomolecules, rather than intrinsic filament properties or generic ionic components, are the primary determinants of network architecture and mechanical behaviour. Importantly, network architecture is not universal but varies strongly according to the cell type from which the extract is derived, indicating that vimentin assemblies are tailored in a cell type-specific manner. Thus, this extract-based reconstitution system enables mechanistic dissection of intermediate filament regulation under near-native biochemical conditions, bridging the current gap between purified systems and the cellular environment. Our findings show that vimentin architecture and mechanics emerge primarily from cytosolic biomolecular factors that organize filaments into cell type-specific networks. These results establish cytosolic regulation as a central mechanism specifying intermediate filament network architecture and function.

cell biology↗

Ballistic Microscopy (BaM)

Light and electron microscopy utilizes interactions of either photons or electrons with matter to create images from cellular to atomic scale. However, these methods are limited in de novo discovery and spatial mapping of unknown biomolecules. Label free methods such as mass spectrometry or sequencing lack live-cell and subcellular context. Here we introduce a new approach, Ballistic Microscopy (BaM), to image cells with physical nanoparticles. We bombard living cells with millions of nanoparticles traveling at [~]1000 m/s. Each particle passes through cells, piercing and capturing attoliters of cytoplasm on a hydrogel substrate while preserving spatial information (SPLAT-MAP). This "physical image" of a live cell captures a molecular fingerprint of a cell on a hydrogel film that can be processed post-capture via multiple techniques such as TEM, Cryo-EM, mass spectrometry, confocal imaging, and DNA amplification. Using BaM, we discover previously unknown composition of CLIP170 and Tau3R condensates in HEK cells, uncovering Keratin-18 as a structural element. BaM establishes a new paradigm of "physical imaging" with modular readout platform for spatially resolved live sampling across cells, tissues, and organisms.

cell biology↗