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Itakura, M.

Publications and source records attributed to Itakura, M..

5 recordsLinked to original sources

Physiological learning involves intrasynaptic reorganization of GluA1-containing AMPA receptors

Learning and memory formation depend on persistent modifications of excitatory synaptic transmission in the hippocampus through changes in AMPA receptor (AMPAR) content and properties at potentiated synapses. However, directly demonstrating such changes after physiological, behavior-driven learning in the intact brain has remained technically difficult. Using SDS-digested freeze-fracture replica labeling (SDS-FRL), we examined the density and nanoscale localization of AMPAR subunits GluA1, GluA2, and GluA3 in the mouse hippocampal CA1 pyramidal cells. GluA2 density was higher than GluA1 and GluA3 densities at both synaptic and extrasynaptic sites, consistent with previous studies showing that AMPARs in CA1 pyramidal cells mostly contain GluA2. The extrasynaptic density of GluA3 was substantially lower than those of GluA1 and GluA2, pointing to distinct trafficking mechanisms. GluA1- and GluA2-containing receptors were enriched at synaptic peripheries, whereas GluA3 was more centrally localized and clustered, a subunit-specific intrasynaptic organization consistent with differential roles in plasticity. To investigate learning-induced reorganization, we combined the inhibitory avoidance, hippocampus-dependent contextual learning paradigm with SDS-FRL in the CA1 stratum radiatum. Learning induced a selective increase in synaptic GluA1 density accompanied by a concurrent decrease in GluA2 density, consistent with a compositional shift toward higher-conductance GluA1-containing receptors, specifically in the proximal CA1 area. Strikingly, we found a redistribution of GluA1 from the synaptic periphery toward the center, accompanied by increased clustering. These findings reveal intrasynaptic receptor redistribution alongside subunit composition change, a nanoscale molecular signature at CA3-CA1 synapses, which may constitute a mechanism of hippocampal memory formation in physiological learning.

neuroscience↗

DIA-MS based plasma peptidomic workflow for profiling organ-derived peptides

Plasma contains diverse bioactive peptides that play crucial roles in maintaining homeostasis and regulating disease responses. However, the presence of peptides derived from high-abundance proteins such as albumin makes comprehensive analysis of native peptides secreted by organs challenging. This study aimed to establish a highly sensitive plasma peptidomic approach by combining data-independent acquisition (DIA) with spectral libraries of plasma and organs. First, peptides were extracted from plasma and eleven organ types using a high-yield peptide extraction method, the differential solubilization method. These peptides were then measured via data-dependent acquisition (DDA) analysis using a timsTOF HT for constructing empirical spectral library. Subsequently, DIA-MS data from plasma samples were measured and analyzed using this spectral library. This strategy achieved identification of, on average, over 5,500 peptides per run, with over 2,000 organ-derived peptides including 19 known bioactive peptides. The novel strategy proposed here enables highly sensitive quantitative analysis of organ-derived peptides in plasma, linking them to their secreting organs. It is expected to substantially contribute not only to the discovery of biomarkers and novel bioactive peptides but also to elucidating the pathophysiology of systemic diseases.

biochemistry↗

2-Mercaptoethanol/DMSO workflow enables highly reproducible quantitative proteomics

Proteomics provides a systematic and high-throughput approach to comprehensively characterize protein networks, enabling insights into cellular functions and disease mechanisms. Carbamidomethylation using iodoacetamide (IAA), a common method for cysteine alkylation, is known to cause nonspecific modifications that increase MS spectral complexity and reduce quantitative accuracy. Here, we extended our 2-mercaptoethanol (2-ME) adduction method, enhanced by dimethyl sulfoxide (DMSO), from single-protein applications to a proteome-wide workflow. Mouse liver proteomes were processed using either 2-ME/DMSO or conventional IAA treatment, followed by LC-MS/MS analysis. The optimized 2-ME treatment increased the number of cysteine-modified peptides by 1.6-1.9-fold. Although total protein identifications were comparable, 77% of proteins exhibited improved sequence coverage. Quantitative reproducibility was also enhanced, with peptides quantified coefficient of variation (CV) [≤] 20% increasing from 61.5% (IAA) to 86.1% (2-ME), and proteins from 80.6% to 93.5%. Application of the workflow to an ovarian clear cell carcinoma reliably detected cisplatin-induced alterations. The 2-ME/DMSO workflow offers a simple and highly reproducible proteomics strategy for accurate quantitative proteomics.

biochemistry↗

Unipolar polysaccharide-mediated attachment of the N2O-reducing bacterium Bradyrhizobium ottawaense SG09 to plant roots.

Agricultural soils are an important source of nitrous oxide (N2O), which has greenhouse and ozone-depleting effects. Bradyrhizobium ottawaense SG09 is a nitrogen-fixing rhizobium with high N2O-reducing activity. Rhizobia form symbiotic nodules in leguminous plants. The initial physical attachment of bacteria to plant roots is a critical step in the establishment of symbiotic interactions. In this study, we performed microscopic analysis using DsRed-expressing B. ottawaense SG09. We revealed that B. ottawaense SG09 attached to both the root surface and root hairs via single cellular poles. This polar attachment was observed not only to the symbiotic host soybean, but also to non-leguminous plants, such as Arabidopsis, rice, corn, and wheat. We identified and analyzed the unipolar polysaccharide (upp) gene cluster, which is proposed to be involved in polar attachment of rhizobia, in the genome of B. ottawaense SG09. We established an Arabidopsis-based interaction assay and demonstrated that uppC and uppE play a critical role in attachment to both the root surface and root hairs.

microbiology↗

Advantages of acute brain slices prepared at physiological temperature in characterization of synaptic functions

Acute brain slice preparation is a powerful experimental model for investigating the characteristics of synaptic function in the brain. Although brain tissue is usually cut at ice-cold temperature (CT) to facilitate slicing and avoid neuronal damage, exposure to CT causes molecular and architectural changes of synapses. To address these issues, we investigated ultrastructural and electrophysiological features of synapses in mouse acute cerebellar slices prepared at ice-cold and physiological temperature (PT). In the slices prepared at CT, we found significant spine loss and reconstruction, synaptic vesicle rearrangement and decrease in synaptic proteins, all of which were not detected in slices prepared at PT. Consistent with these structural findings, slices prepared at PT showed higher release probability and higher detectability of long-term depression after motor learning compared with slices prepared at CT. These results indicate substantial advantages of the slice preparation at PT for investigating synaptic functions in different physiological conditions.

neuroscience↗