Biology subjects

Islam, Z. M.

Publications and source records attributed to Islam, Z. M..

3 recordsLinked to original sources

bioRxiv2026

Selective Packaging of Rotavirus Double-Layered Particles into Host Microvesicles

Rotavirus is a non-enveloped RNA virus traditionally thought to exit host cells through lytic or conventional vesicular pathways, but recent evidence shows that it also exploits host microvesicles for non-lytic transmission. To characterize this transmission pathway, we combined high-resolution microscopy (TEM, confocal microscopy, immunogold labeling) with biochemical and infectivity assays. Our work revealed that rotavirus infection robustly increased microvesicle production, and individual vesicles frequently contained multiple viral particles. Quantitative analysis revealed striking differential partitioning of particle types. Mature triple-layered particles predominated within infected cells, whereas extracellular microvesicles were strongly enriched for immature double-layered particles. Although free double-layered particles lack the outer capsid required for classical receptor-mediated entry, microvesicle-associated particles initiated productive infections, whereas disruption of the vesicular membrane abolished infectivity. These findings suggest an evolutionarily advantageous dual transmission strategy. By using host-derived membranes to transmit otherwise non-infectious intermediates, rotavirus can bypass outer-capsid-dependent entry, potentially reducing the energetic cost of producing fully mature infectious particles while enabling collective transmission. Maintaining a free-virus pathway may nevertheless be important because transmission by individual mature virions imposes population bottlenecks that limit the propagation of defective or cheating genomes and preserve high-fitness genotypes. Thus, partitioning viral progeny between vesicle-associated double-layered particles and free triple-layered particles may balance the immediate benefits of collective spread with long-term genetic quality control. Whether double-layered particle enrichment arises from active sorting or spatial coupling between viral assembly and microvesicle biogenesis remains unresolved.

microbiology↗

bioRxiv2026

RfxCas13d Mediates Broad-Spectrum Suppression of Highly Pathogenic Avian Influenza

Highly pathogenic avian influenza viruses (HPAIVs) continue to cause substantial disease in birds and mammals, with repeated H5N1 spillovers highlighting the need for broadly protective antiviral strategies. Here we develop a programmable RNA-targeting antiviral platform based on RfxCas13d and evaluate its activity in avian cells. Screening of five Cas13 orthologs in chicken DF1 fibroblasts revealed RfxCas13d as the most potent and well tolerated effector. Virus-specific CRISPR RNAs (crRNAs) targeting conserved regions of positive- and negative-sense influenza RNA were tested against A/WSN/033[H1N1] and multiple HPAIV isolates, including a member of clade 2.3.4.4b H5N1. Targeting positive-sense RNA conferred superior influenza inhibitory activity and further enhanced by multiplexed crRNA expression. These findings establish RfxCas13d as a versatile RNA-guided antiviral platform and provide a route for broad-spectrum influenza control through conserved RNA targeting.

microbiology↗

bioRxiv2025

Translation Efficiency Impacts Phage Lysis Timing and Its Precision in Single Cells

The timing of host cell lysis is a fundamental life history parameter in bacteriophages as it presents an evolutionary trade-off between maximizing intracellular phage replication and optimizing transmission to new host cells, ultimately determining viral fitness in dynamic bacterial populations. In the bacteriophage {lambda}, lysis time is dependent on the expression of a timekeeper protein, holin, which accumulates in the Escherichia coli inner membrane. Cell lysis is triggered when the membrane concentration of holin crosses a critical threshold level. In the present study, we investigated the effects of the rate of holin translation on lysis timing and its precision. We show that modulating holin translation efficiency through genetic modifications and antibiotic treatment alters bacteriophage lysis timing and its precision, providing insight into how phages optimize the evolutionary trade-off between replication and transmission. Reducing ribosomal binding affinity decreased holin expression and delayed lysis, while optimizing the Shine-Dalgarno sequence enhanced translation and accelerated lysis. Surprisingly, very low tetracycline concentrations may have improved translation efficiency and hastened lysis, whereas higher doses predictably delayed it. In all cases, longer lysis times corresponded with decreased timing variability. A model that incorporates stochastic gene expression with additional stochasticity in the initiation of holin expression was sufficient to explain the data. Thus, we demonstrated that modifying the rate of holin translation can be used as an evolutionary strategy to achieve optimum lysis timing. ImportanceOur prior work demonstrated that phage lysis timing is calibrated to optimize fitness based on environmental conditions affecting host availability and phage replication. We identified an optimal threshold--the critical holin concentration--that minimizes lysis time variability. Genetic manipulation of the holin gene altered the lysis threshold and generated phages with non-optimal early and late lysis times. The current study reveals that adjusting holin translation rates offers another mechanism for modifying lysis timing. Phages therefore have multiple means to adjust the timing of host lysis in order to maximize fitness under different selective pressures.

microbiology↗