Biology subjects

Ishino, F.

Publications and source records attributed to Ishino, F..

9 recordsLinked to original sources

bioRxiv2026

A eutherian-specific metaviral gene, RTL6, coordinates microglial inflammatory responsiveness and state regulation

RTL6 (also known as SIRH3) is a eutherian-specific metavirus-derived gene highly conserved among placental mammals. We previously demonstrated that RTL6 is expressed in microglia and secreted into the brain extracellular space, where it mediates the trapping and clearance of bacterial lipopolysaccharide (LPS). However, its role in microglial TLR4 signaling remained unclear. To investigate the earliest LPS response, we performed RNA-seq analysis of wild-type and Rtl6-deficient primary microglia following 10 min of LPS stimulation. Rtl6-deficient microglia exhibited compensatory upregulation of residual transcripts derived from the untranslated region of Rtl6, suggesting feedback regulation of Rtl6 expression. Loss of RTL6 attenuated the induction of immediate-early response genes, including Fos, Jun, Nr4a1, Nr4a2, Egr2, and Egr3, together with broad suppression of interferon-responsive and inflammatory transcriptional programs. Altered neuronal and oligodendrocyte/myelin interaction pathways indicated remodeling of microglial communication networks. Strikingly, genes involved in cell-cycle progression, DNA replication, chromatin assembly, DNA repair, and genome maintenance were coordinately upregulated, including multiple disease-associated microglia (DAM)-related genes. Collectively, these findings indicate that RTL6 couples extracellular LPS sensing to inflammatory transcriptional responses while regulating microglial functional state transitions. Our results identify RTL6 as a previously unrecognized component of the regulatory network governing microglial functional states in placental mammals.

molecular biology↗

bioRxiv2025

PEG10-ORF1 programs trophoblast progenitor development for placental labyrinth formation

The emergence of the placenta was a significant event in mammalian evolution, enabling therian mammals to give birth to live young through viviparity. A key genomic change associated with this process was likely the acquisition of the therian-specific paternally expressed 10 (PEG10) from a metavirus, as Peg10-null mutant mice exhibit early embryonic lethality due to the absence of both the spongiotrophoblast and labyrinth layers in the placenta. PEG10 encodes a GAG-like open reading frame 1 (ORF1) and a POL-like ORF2, and produces two proteins, PEG10-ORF1 and PEG10-ORF1/2 fusion proteins, via the -1 frameshift mechanism conserved in retroviruses and metaviruses. Here, we demonstrate PEG10-ORF1 plays an essential and distinct role in labyrinth development. Mice lacking ORF1 but retaining the ORF1/2 protein initially developed normally in both embryos and placentas; however, later exhibited underdevelopment of the placental labyrinths complex microarchitecture, accompanied by mid-to late gestational growth retardation and lethality. These severe defects are most likely attributable to dysregulated development of labyrinth trophoblast precursor (LaTP) cells. Beyond its essential role in early placental formation, we previously demonstrated that the DSG protease domain within PEG10-ORF1/2--a metaviruse-derived feature--is critical for maintaining fetal capillaries during late gestation. Thus, PEG10 fulfills multiple indispensable functions in placental formation and maintenance by exploiting a metavirus-derived multi-protein and -peptide production system, despite being a single gene. This study provides additional evidence underscoring the profound role of PEG10 acquisition in therian placental evolution. Significance StatementThe placenta is an essential organ for viviparous reproduction in therian mammals; therefore, its evolutionary emergence is of significant interest. One key event may have been the acquisition of PEG10, a metavirus (retrovirus-like LTR retrotransposon)- derived gene, by the common therian ancestor. We previously showed that Peg10 is required for early placental development and that its protease domain is essential for late-gestational maintenance of fetal capillaries within the placental labyrinth. Here, we provide additional genetic evidence that Peg10 is also indispensable for mid-gestational development of the placental labyrinthine microvasculature. Together, these findings illustrate how multiple, stage-specific functions of a single metavirus-derived gene, PEG10, coordinate placental formation and maintenance, highlighting the evolutionary importance of PEG10 acquisition in therian placentation.

developmental biology↗

bioRxiv2024

RTL4, a retrovirus-derived gene implicated in autism spectrum disorder, is a microglial gene that responds to noradrenaline in the postnatal brain

RTL4, a gene acquired from a retrovirus, is a causative gene in autism spectrum disorder. Its KO mice exhibit increased impulsivity, impaired short-term spatial memory, failure to adapt to novel environments, and delayed noradrenaline (NA) recovery in the frontal cortex. However, due to its very low expression in the brain, it remains unknown which brain cells express RTL4 and its dynamics in relation to NA. Here, using knock-in mice carrying endogenous Rtl4 fused to Venus, we demonstrated that RTL4 is a microglial gene with several important properties. The RTL4-Venus fusion protein was detected as a secreted protein in the midbrain, hypothalamus, hippocampus and amygdala in the postnatal brain. Its signal intensity was high during critical periods of neonatal adaptation to novel environments and was upregulated by various stimuli, such as handling the mice, mild environmental changes and administration of isoproterenol, an agonist of adrenergic beta receptors. It was decreased by anesthesia but was maintained by the administration of milnacipran, an NA reuptake inhibitor. These results suggest that RTL4 intensity depends on the arousal state via NA and is somehow related to the NA reuptake process. In vitro mixed glial culture experiments demonstrated that Rtl4 is a microglial gene and suggested that RTL4 secretion responds rapidly to isoproterenol. Taken together with previous results from Rtl4 KO mice, microglial RTL4 plays an important role in the NA response and it is likely involved in the development of the NAergic neuronal network in the brain.

molecular biology↗

bioRxiv2024

Targeting of retrovirus-derived Rtl8a/8b reduces social response and increases apathy-like behavior associated with GABRB2 reduction

Retrotransposon Gag-like (RTL) 8A, 8B and 8C are eutherian-specific genes derived from a certain retrovirus. They clustered as a triplet of genes on the X chromosome, but their function remains unknown. Here, we demonstrate that Rtl8a and Rtl8b play important roles in the brain: their double knockout (DKO) mice not only exhibit reduced social responses and increased apathy-like behavior, but also become obese from young adulthood. Mouse RTL8A/8B proteins are expressed in the prefrontal cortex and hypothalamus and localize to both the nucleus and cytoplasm of neurons, presumably due to the N-terminal nuclear localization signal-like sequence at the N-terminus. An RNAseq study in the cerebral cortex revealed reduced expression of several GABA type A receptor subunits, in particular the {beta}2 subunit of Gabrb2, in DKO. We confirmed the reduction of GABRB2 protein in the DKO cerebral cortex by Western blotting. As GABRB2 has been implicated in the etiology of several neurodevelopmental disorders, it is likely that the reduction of GABRB2 is one of the major causes of the neuropsychiatric defects in the DKO mice.

molecular biology↗

bioRxiv2023

Retrovirus-derived RTL9 plays an important role in innate antifungal immunity in the eutherian brain

Retrotransposon Gag-like (RTL) genes plays a variety of essential/important roles in the eutherian placenta and brain. It has recently been demonstrated that RTL5 and RTL6 (aka sushi-ichi retrotransposon homolog 8 (SIRH8) and SIRH3) are microglial genes that play important roles in the brains innate immunity against viruses and bacteria by their removal of double-stranded RNA and lipopolysaccharide, respectively. Here we demonstrate that RTL9 (aka SIRH10) also plays an important role, degrading fungal zymosan in the brain. The RTL9 protein is localized in the microglial lysosomes where incorporated zymosan is digested. Interestingly, in Rtl9 knockout mice expressing RTL9{Delta}C protein lacking the C-terminus retroviral GAG-like region, the zymosan degrading activity was lost, demonstrating that RTL9 is essentially engaged in this reaction, presumably via its GAG-like region. Together with our previous study, this result highlights the importance of three retrovirus-derived microglial RTL genes as eutherian-specific constituents of the current brain innate immune system, RTL9, RTL5 and RTL6 responding to fungi, viruses and bacteria, respectively. Author SummaryWe have recently demonstrated that RTL5 and RTL6 are microglial genes that play important roles in the brains innate immunity against viruses and bacteria. In this report, we demonstrate that RTL9 is functional in innate antifungal immunity in the brain because Rtl9 KO mice lose zymosan degradation activity. Fungi are one of the most dangerous infectious pathogens, along with viruses, bacteria and protozoa. Phagocytic cells, such as microglia/macrophages, are essential for mounting a defense against fungal infection. As defects in these cells reduce host resistance to fungal infection, RTL9 is an antifungal therapy target as a newly identified member of innate antifungal immunity in eutherians.

evolutionary biology↗

bioRxiv2023

Targeting retrovirus-derived Rtl8a and 8b causes late onset obesity and neurodevelopmental defects

Retrotransposon Gag-like (RTL) 8A, 8B and 8C are triplet genes of uncertain function that form a cluster on the X chromosome. They are eutherian-specific genes presumably derived from a certain retrovirus. Here, we demonstrate that Rtl8a and Rtl8b play an important role in growth and behavior via brain functions in the hypothalamus and prefrontal cortex. Rtl8a and Rtl8b double knockout (DKO) mice exhibited overgrowth due to hyperphagia from young adulthood and reduced social responses, increased apathy-like behavior. RTL8A and RTL8B proteins are localized to both the nucleus and cytoplasm of neurons presumably due to an N-terminal nuclear localization signal-like sequence. An increment in nucleus size was also detected in the neurons in the prefrontal cortex, suggesting neuronal dysfunction. These data give another strong evidence that retrovirus-derived acquired genes contributed to the establishment of the current eutherian developmental system in a wide variety of ways. Summary statementRtl8a and Rtl8b double knockout mice exhibited late onset obesity and neurodevelopmental defects, demonstrating that these eutherian specific retrovirus-derived acquired genes encoding proteins with only 113 amino acids play important roles in the brain presumably via their functions in the hypothalamus and prefrontal cortex.

molecular biology↗

bioRxiv2022

In vitro generation of human embryonic stem cell-derived heart organoids possessing physiological ion currents

Recently, methods for in vitro organogenesis have been broadly developed due to their strong potential for human applications in medicine. In the present study, we optimized the culturing method of human heart organoids (hHOs) from embryonic stem cells (ESCs) in the presence of the highly concentrated laminin-entactin and fibroblast growth factor 4. The resulting hHOs showed distinctive cardiac morphology with atrium- and ventricle-like chambers composed of cardiac cells as well as expressed the integral proteins of gap junctions and ion channels. In fact, isolated cardiomyocytes from these hHOs exhibited Na and Ca currents by patch clamp analysis. These results indicated that the present method will provide a powerful tool for cardiac safety assessment of newly developed drugs as an in vitro human ESC-derived test system. One-Sentence SummaryFGF4 and ECM contribute to the generation of human HOs with heart compartments and electrophysiological properties.

bioengineering↗

bioRxiv2021

Retrovirus-derived acquired genes, RTL5 and RTL6, are novel constituents of the innate immune system in the eutherian brain.

Retrotransposon Gag-like 5 (RTL5, also known as sushi-ichi-related retrotransposon homolog 8 (SIRH8)) and RTL6 (aka SIRH3) are eutherian-specific genes presumably derived from a retrovirus and phylogenetically related to each other. RTL5 encodes a strongly acidic protein while RTL6 encodes an extremely basic protein, and the former is well conserved and the latter extremely well conserved among the eutherians, indicating their unique and critically important roles as acquired genes. Here we report that RTL5 and RTL6 are microglial genes playing roles in the front line of brain innate immune responses against distinct pathogens. Venus and mCherry knock-in mice exhibited expression of RTL5-mCherry and RTL6-Venus fusion proteins in microglia and as extracellular granules in the central nervus system (CNS), and displayed a rapid response to pathogens such as lipopolysaccharide (LPS), double-stranded (ds) RNA analog and non-methylated CpG DNA. These proteins trapped pathogens in microglia in a variety of RTL-pathogen complexes depending on the pathogens. These results demonstrate that RTL5 and RTL6 exert functional effects against different hazardous substances cooperatively and/or independently to protect the developing and/or mature brain. This provides the first evidence that retrovirus-derived genes play a role in the innate immune system of the eutherian brain.

evolutionary biology↗

bioRxiv2021

PEG10 viral aspartic protease domain is essential for the maintenance of fetal capillary structure in the mouse placenta

The therian-specific gene paternally expressed 10 (Peg10) plays an essential role in placenta formation: Peg10 knockout (KO) mice exhibit early embryonic lethality due to severe placental defects. The PEG10 protein exhibits homology to long terminal repeat (LTR) retrotransposon GAG and POL proteins, therefore mice harboring a mutation in its highly conserved viral aspartic protease motif in the POL-like region were generated because it is essential for LTR retrotransposons/retroviruses. Intriguingly, frequent perinatal lethality, not early embryonic lethality, was observed with fetal and placental growth retardation starting mid-gestation. In the mutant placentas, severe defects were observed in the fetal vasculature, where PEG10 is expressed in the three trophoblast cell layers that surround fetal capillary endothelial cells. Thus, Peg10 has essential roles not only in early placenta formation, but also in placental vasculature maintenance from mid- to late-gestation. This implies that along the feto-maternal placenta interface an interaction occurs between two retrovirus-derived genes, Peg10 and retrotransposon Gag like 1 (Rtl1, also called Peg11), that is essential for the maintenance of fetal capillary endothelial cells. Summary statementDisruption of the highly conserved viral aspartic protease domain in PEG10 causes placental abnormality leading to perinatal lethality in mice.

developmental biology↗