Biology subjects

Ishibashi, Y.

Publications and source records attributed to Ishibashi, Y..

4 recordsLinked to original sources

bioRxiv2025

Advanced neural activity mapping in brain organoids via field potential imaging with ultra-high-density CMOS microelectrodes.

Human iPSC-derived brain organoids and assembloids have emerged as promising in vitro models for recapitulating human brain development, neurological disorders, and drug responses. However, detailed analysis of their electrophysiological properties requires advanced measurement techniques. Here, we present a novel analytical approach utilizing ultra-high-density (UHD) CMOS microelectrode arrays (MEAs) containing 236,880 electrodes (10.52 m x 10.52 m each) distributed over a broad sensing area of 32.45 mm2 for field potential imaging (FPI) of brain organoids. Neuronal activity was recorded simultaneously from over 46,000 electrodes interfaced with brain organoids, allowing for the identification of single-cell firing events and the assessment of neuronal network connectivity based on individual spikes. In midbrain organoids, administration of L-DOPA revealed both excitatory and inhibitory cellular responses, with a dose-dependent increase in the proportion of excitatory responses, suggesting enhanced network connectivity. Capitalizing on the spatial and temporal resolution of UHD-CMOS-MEAs, we introduced new endpoints for network activity: propagation velocity and propagation area. In cortical organoids, application of the GABAA receptor antagonist picrotoxin led to increased propagation velocity, whereas the NMDA receptor antagonist MK-801 resulted in a broad reduction of propagation area, along with localized increases. As FPI enables direct recording of electrical potential waveforms, frequency-domain analyses were also conducted. Spontaneous activity in cortical organoids exhibited region-specific frequency distributions, with gamma-band activity displaying distinct patterns compared to other frequency bands. Additionally, in midbrain-striatal assembloids, electrophysiological activity was observed in both regions. Connectivity analysis showed that treatment with 4-aminopyridine enhanced inter-organoid connection strength. This large-scale, single-cell-resolved recording approach using UHD-CMOS-MEAs facilitates comprehensive analysis of network connectivity, propagation velocity and propagation area, and frequency characteristics. It represents a powerful platform for advancing our understanding of the electrophysiological functions of brain organoids and assembloids, and holds significant potential for drug screening and disease modeling in human neuroscience research.

neuroscience↗

bioRxiv2025

Field potential Imaging in human iPSC- derived Cardiomyocytes using UHD-CMOS-MEA

Evaluation using beat propagation analysis of human iPS cardiomyocytes is an effective approach for assessing human cardiac safety in drug development. However, current applications are primarily focused on detecting QT prolongation and arrhythmia risk, while its ability to comprehensively detect cardiotoxicity remains insufficient. Additionally, predicting the mechanism of action, which is crucial in drug development, remains challenging. In this study, we employed field potential imaging (FPI) using an ultra-high-density (UHD) CMOS microelectrode array (MEA) comprising 236,880 electrodes with high spatiotemporal resolution, capable of recording the activity of a monolayer of cardiomyocytes with tens of electrodes per cell. This method enabled the establishment of novel electrophysiological endpoints, including the number of excitation origins, fluctuations in origin positions, conduction velocity, and propagation area. Pharmacological characterization revealed drug-specific effects: isoproterenol increased excitation origins, mexiletine reduced conduction velocity, and E-4031 decreased propagation area while inducing early afterdepolarizations. Multivariate analysis of 13 compounds across 17 electrophysiological endpoints distinguished conduction velocity and propagation patterns based on their mechanisms of action. Additionally, 0.1 M doxorubicin exposure for 24 hours significantly reduced conduction velocity and propagation area, allowing early detection of chronic cardiotoxicity. These findings suggest that UHD-CMOS-MEA-based FPI enhances cardiotoxicity detection at low concentrations and precisely characterizes ion channel activity across different drug concentrations. The integration of novel electrophysiological endpoints derived from UHD-CMOS-MEA-based FPI, including excitation origin analysis, conduction velocity, and propagation area, along with multivariate analysis, is anticipated to establish a next-generation in vitro platform for comprehensive cardiotoxicity risk assessment and mechanism-based prediction of drug candidates.

pharmacology and toxicology↗

bioRxiv2024

Live-cell single-molecule fluorescence microscopy for protruding organelles reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of inner ear hair cells

Stereocilia are unidirectional F-actin-based cylindrical protrusions on the apical surface of inner ear hair cells and function as biological mechanosensors of sound and acceleration. Development of functional stereocilia requires motor activities of unconventional myosins to transport proteins necessary for elongating the F-actin cores and to assemble the mechanoelectrical transduction (MET) channel complex. However, how each myosin localizes in stereocilia using the energy from ATP hydrolysis is only partially understood. In this study, we develop a methodology for live-cell single-molecule fluorescence microscopy of organelles protruding from the apical surface using a dual-view light-sheet microscope, diSPIM. We demonstrate that MYO7A, a component of the MET machinery, traffics as a dimer in stereocilia. Movements of MYO7A are restricted when scaffolded by the plasma membrane and F-actin as mediated by MYO7As interacting partners. Here, we discuss the technical details of our methodology and its future applications including analyses of cargo transportation in various organelles.

cell biology↗

bioRxiv2022

Large-area electrical imaging having single neuron resolution using 236,880 electrodes CMOS-MEA technology

The electrophysiological technology having a high spatio-temporal resolution at the single-cell level, and noninvasive measurements of large areas provides insights on underlying neuronal function. Here, we used a complementary metal-oxide semiconductor (CMOS)-microelectrode array (MEA) that uses 236,880 electrodes each with an electrode size of 11.22 x 11.22 {micro}m and 236,880 covering a wide area of 5.5 x 5.7 mm in presenting a detailed and single-cell-level neural activity analysis platform for brain slices, human iPS cell-derived cortical networks, peripheral neurons, and human brain organoids. Propagation pattern characteristics between brain regions changes the synaptic strength into compounds based on single-cell time-series patterns, classification based on single DRG neuron firing patterns and compound responses, axonal conduction characteristics and changes to anticancer drugs, and network activities and transition to compounds in brain organoids were extracted. This detailed analysis of neural activity at the single-cell level using our CMOS-MEA provides a new understanding the basic mechanisms of brain circuits in vitro and ex vivo, on human neurological diseases for drug discovery, and compound toxicity assessment.

neuroscience↗