Biology subjects

Ingole, K. D.

Publications and source records attributed to Ingole, K. D..

3 recordsLinked to original sources

bioRxiv2020

Arabidopsis inositol polyphosphate kinases regulate COP9 signalosome functions in phosphate-homeostasis

Plant Cullin RING Ubiquitin E3 ligases (CRLs) facilitate targeted protein degradation during physiological development and adaptation to stress. The deneddylase activity of COP9 signalosome (CSN) regulates cellular ratios of neddylated cullins available for the continuum of CRL functions. While selective inositol polyphosphates (InsPs) function as co-factors in plant responses involving the ubiquitylation of negative regulators, a relationship to CSN-CRL activities has not yet been established. Here, we show that the two Arabidopsis thaliana InsP-kinases IPK1 and ITPK1 physically interact and metabolically connect with the CSN holo-complex to modulate cullin deneddylation efficiency. Specifically, functional deficiency of ITPK1 lowers cullin deneddylation rates and disrupts the dissociation equilibrium of CSN5, the deneddylase catalytic subunit, and CUL1 with the holo-complex. Our results identify a novel auto-regulatory switch of CSN functions, defined by deneddylation activity. We further demonstrate that phosphate starvation response (PSR), which is induced in Pi-starved wild-type plants and constitutive in the above InsP-kinase mutants, is orchestrated in part by reduced deneddylation rates that, in turn, affect the stability of SPX4, a key negative regulator of PSR. Pharmacological inhibition of cullin neddylation stabilizes SPX4 and impairs PSR, thus linking CSN-CRL dynamics to phosphate (Pi)-sensing. Conversely, when exposed to compounds that inhibit CSN5 deneddylase activity, wild-type plants display phenotypes similar to the above InsP-kinase mutants. Overall, our data reveal that the regulation of plant Pi-starvation responses by specific InsP-kinases is caused by a direct role of these kinases in balancing coordination between CRL-CSN activities.

plant biology↗

bioRxiv2020

Proteomic analysis of SUMO1-SUMOylome changes during defense elicitation in Arabidopsis

Rapid adaptation of plants to developmental or physiological cues is facilitated by specific receptors that transduce the signals mostly via post-translational modification (PTM) cascades of downstream partners. Reversible covalent attachment of SMALL UBIQUITIN-LIKE MODIFIER (SUMO), a process termed as SUMOylation, influence growth, development and adaptation of plants to various stresses. Strong regulatory mechanisms maintain the steady-state SUMOylome and mutants with SUMOylation disturbances display mis-primed immunity often with growth consequences. Identity of the SUMO-substrates undergoing SUMOylation changes during defences however remain largely unknown. Here we exploit either the auto-immune property of an Arabidopsis mutant or defense responses induced in wild-type plants against Pseudomonas syringae pv tomato (PstDC3000) to enrich and identify SUMO1-substrates. Our results demonstrate massive enhancement of SUMO1-conjugates due to increased SUMOylation efficiencies during defense responses. Of the 261 proteins we identify, 29 have been previously implicated in immune-associated processes. Role of others expand to diverse cellular roles indicating massive readjustments the SUMOylome alterations may cause during induction of immunity. Overall, our study highlights the complexities of a plant immune network and identifies multiple SUMO-substrates that may orchestrate the signalling.

plant biology↗

bioRxiv2020

Contrasting functions of Arabidopsis SUMO1/2 isoforms with SUMO3 intersect to modulate innate immunity and global SUMOylome responses

Reversible covalent attachment of SMALL UBIQUITIN-LIKE MODIFIERS (SUMOs) on target proteins regulate diverse cellular process across all eukaryotes. In Arabidopsis thaliana, most mutants with perturbed global SUMOylome display severe impairments in growth and adaptations to physiological stresses. Since SUMOs self-regulate activities of SUMOylation-associated proteins, existence of multiple isoforms introduces possibilities of their functional intersections which remain unexplored especially in plant systems. Using well-established defense responses elicited against virulent and avirulent Pseudomonas syringae pv. tomato strains, we investigated crosstalks in individual and combinatorial Arabidopsis sum mutants. Here we report that while SUM1 and SUM2 additively, but not equivalently suppress basal and TNL-specific immunity via down-regulation of salicylic acid (SA)-dependent responses, SUM3 promotes these defenses genetically downstream of SA. Remarkably, the expression of SUM3 is transcriptionally suppressed by SUMO1 or SUMO2. The loss of SUM3 not only lowers basal or post-bacterial challenge responsive enhancements of SUMO1/2-congugates but also reduces upregulation dynamics of defensive proteins and SUMOylation-associated transcripts. Combining a sum3 mutation partially attenuates heightened immunity of sum1 or sum2 mutants suggesting intricate functional impingements among these isoforms in optimizing immune amplitudes. Similar SUM1-SUM3 intersections also affect global SUMOylome responses to heat-shock affecting most notably the induction of selective heat-shock transcription factors. Overall, our investigations reveal novel insights into auto-regulatory mechanisms among SUMO isoforms in host SUMOylome maintenance and adjustments to environmental challenges. Author SummaryIn plants, similar to animals, protein functions are regulated at multiple levels. One prevalent mode is to allow covalent linkage of small proteins to specific amino acids on targets thereby affecting its fate and function. One such kind of modification named as SUMOylation involves attachment of SUMO proteins. A plant maintains strict control over its pool of SUMOylated proteins (termed SUMOylome) which upon biotic or abiotic stresses are altered to facilitate appropriate responses, returning back to steady-state when the threat subsides. In mutants of the model plant Arabidopsis thaliana having disturbed steady-state SUMOylome, growth and developmental defects ensue. These mutants are auto-immune showing more resistance to infection by the bacterial pathogen Pseudomonas syringae. However, Arabidopsis SUMO-family are comprised of multiple members raising the question about their specificity or functional crosstalks. We discovered that two SUMO members function in coordination to suppress immunity including the repression of a third member which supports defenses. The expression of this third member during pathogen attack or heat-shock influences the responsive changes in the host SUMOylome likely suggesting SUMOs themselves play vital role in these adaptations. Overall, our work highlights novel intersections of SUMO members in mounting stress-specific responses.

plant biology↗