Huyvaert, K. P. | bioRxiv Science

bioRxiv2025

Bighorn sheep T2T genome assembly reveals differences in immune genes: a potential cause of high morbidity due to respiratory pathogens

The bighorn sheep (Ovis canadensis), despite its close relation to domestic sheep, suffer higher morbidity and mortality from respiratory disease complexes, likely due to genetic differences in immune responses. Unraveling highly repetitive regions such as immune loci and genetic differences was problematic until now. We generated a bighorn sheep telomere-to-telomere assembly, adding 14.28% of novel sequence compared to the previous reference. This enabled the first complete immune loci annotation revealing the IGL and TR loci are significantly short in bighorn sheep. Importantly, a critical immune gene GBP5 and ZNF501, involved in Golgi-mediated immune response, are lacking in bighorn but present in domestic sheep. Re-analysis of a Mycoplasma ovipneumoniae carriage study, using this assembly, identified the immune gene CAPN2 as a key genetic marker for disease carriage, not observable in the original study. This work provides a critical resource for identifying phenotype-linked genetic variation and exploring evolutionary adaptations of bighorn sheep.

genomics↗

bioRxiv2025

Female sexual agency and frequent extra-pair copulations, but no extra-pair paternity, in Nazca boobies (Sula granti)

Extra-pair copulations (EPCs) are the poorly known antecedents of extra-pair fertilizations (EPFs) in birds. EPFs occur in most bird species that have been examined, but sexual conflict will generally reward females hiding their EPCs from males attempting to protect their paternity. EPCs will be difficult for researchers to document, and necessarily underestimated, in that case. We measured EPC behaviors and EPF frequency in a colonial seabird, the Nazca booby Sula granti, in which all copulations occur in a visually open setting with numerous possible copulatory partners readily available. Females are larger and more physically powerful than males, and are the numerically limiting sex, perhaps limiting options for males to control females. We found that all copulations were voluntary, and females sexual activities were wholly unconstrained by male coercion. Most females had multiple copulatory partners in the weeks preceding egg-laying. Despite the commonness of EPC, EPFs did not occur. The different schedules of EPC and within-pair copulation (WPC) provided a sufficient explanation for this outcome: during the ovulation window days before laying, WPC rate increased and EPC rate approached zero. To our knowledge, this is the first robust evidence of complete sexual agency in a female bird aside from lek-mating species, contributing a valuable exemplar to the literature on sexual conflict over reproduction.

animal behavior and cognition↗