bioRxiv Science⌕ Search

Biology subjects

Huynh, A. T.

Publications and source records attributed to Huynh, A. T..

3 recordsLinked to original sources

Artificial Brain Extracellular Fluid in Radioligand Binding Assays: Effects on Affinities of Ligands at Serotonin 5-HT7 Receptors

Radioligands are well-established tools for measuring ligand binding affinities at receptors. Determining affinities of test ligands at many G protein-coupled receptors (GPCRs), including serotonin (5-HT) GPCRs, often involves incubating a radioligand, test ligands, and receptors expressed in cell membranes in Tris buffers, and commonly in a standard binding buffer (SBB) containing Tris HCl, MgCl2, and EDTA until ligand- receptor equilibrium binding is established. However, the composition of extracellular fluid (ECF), where ligands first encounter GPCRs in vivo, differs from that of SBB, which we hypothesized impacts ligand affinity. We conducted radioligand binding assays to compare the affinities of the agonist 5-carboxamidotryptamine (5-CT) and two antagonists/inverse agonists, lurasidone and SB-269970, at [3H]5-CT-labeled 5-HT7 GPCRs stably expressed in HEK293 cells using SBB or artificial brain ECF (abECF) as the medium at room or physiological temperatures (RT or 37{degrees}C). The rank order of ligand potencies, as well as 5-CTs affinity, was unaffected by the different experimental environments. [3H]5-CT 5-HT7R Bmax values increased in abECF and modestly at 37{degrees}C, without affecting Kd, suggesting an increase in active state conformations. In contrast to 5-CT, antagonist/inverse agonist affinities depended on both media and temperature. The affinities of lurasidone and SB-269970 at 5-HT7 receptors were substantially higher at 37{degrees}C than at RT. Also, incubation of lurasidone and SB-269970 in abECF resulted in significantly higher affinities compared to incubation in SBB (e.g., [~]10-fold higher for lurasidone), indicating that temperature and the buffer and ionic composition of abECF influence 5-HT7 antagonist/inverse agonist ligand binding. As a high concentration of NaCl in abECF is a remarkable difference from the composition of SBB, we probed the impact of removing NaCl from abECF; removal of NaCl had a minor affinity-enhancing effect on the antagonists, inferring that other ions, glucose, or sodium phosphates in abECF underlie significant changes in ligand-receptor binding interactions. Overall, the observations indicate that measuring 5-HT7 antagonist affinities at [3H]5-CT-labeled 5-HT7Rs with abECF at physiological temperature--modeling the in vivo brain environment where ligands and GPCRs interact--yields distinct affinity values that may be more physiologically accurate than values obtained from SBB. Moreover, several historical reports demonstrate that temperature, ions, and buffers have no consistent effect on the affinities of distinct ligands at various other GPCRs, and there is no consensus binding buffer used in the literature for any GPCR, which may contribute to the variability in ligand-GPCR affinities reported. These findings show that buffer and temperature impacted 5-HT7R ligand binding affinities and highlight the importance of considering such conditions when performing experiments.

pharmacology and toxicology↗

Connectivity between supplementary motor complex and primary motor cortex: a dual-coil paired-pulse TMS study

In recent years, dual-coil paired-pulse transcranial magnetic stimulation (ppTMS) has garnered interest for its potential in elucidating neural circuit dynamics. In this study, the dual-coil ppTMS was utilized to assess the effective connectivity between the supplementary motor complex (SMC) and the primary motor cortex (M1) in humans. A robust facilitatory connection between the SMC and M1 was observed, manifested as a 19% increase in mean peak-to-peak motor-evoked potentials following preconditioning of SMC 7 ms prior to M1 stimulation. Importantly, the facilitatory influence of SMC only occurred when the preconditioning stimulation was administered 4 cm anterior to Cz but not when applied at 5-cm, 6-cm, or 7-cm distance. While previous work has focused on demonstrating important temporal dynamics for SMC-M1 plasticity, the present findings highlight a critical contribution of spatial specificity for modulation of SMC-M1 circuitry. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/610643v1_ufig1.gif" ALT="Figure 1"> View larger version (44K): org.highwire.dtl.DTLVardef@12fb447org.highwire.dtl.DTLVardef@e4bfacorg.highwire.dtl.DTLVardef@1e3d262org.highwire.dtl.DTLVardef@93984_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIThe conditioned stimulus induced larger MEPs compared to the unconditioned stimulus C_LIO_LIThe connectivity between SMC and M1 diminished when the SMC coil was moved forward C_LIO_LIFindings highlight the importance of spatial specificity for modulation of SMC-M1 circuitry C_LI

neuroscience↗

BEAN and HABAS: Polyphyletic insertions in RNAP that point to deep evolutionary divergence of bacteria

The {beta} and {beta} subunits of the RNA polymerase (RNAP) are large proteins with complex multi-domain architectures that include several insertional domains. Here, we analyze the multi-domain organizations of bacterial RNAP-{beta} and RNAP-{beta} using sequence, experimentally determined structures and AlphaFold structure predictions. We observe that bacterial lineage-specific domains in RNAP-{beta} belong to a group of domains that we call BEAN (Broadly Embedded ANnex) and that in RNAP-{beta}, bacterial lineage-specific domains are HAmmerhead/BArrel-Sandwich Hybrid (HABAS) domains. The BEAN domain has a characteristic three-dimensional structure composed of two square bracket-like elements that are antiparallel relative to each other. The HABAS domain contains a four-stranded open {beta}-sheet with a GD-box-like motif in one of the {beta}-strands and the adjoining loop. The BEAN domain is identified not only in the bacterial RNAP-{beta}, but also in the archaeal version of universal ribosomal protein L10. The HABAS domain is observed as an insertional domain in several metabolic proteins. The phylogenetic distributions of bacterial lineage-specific insertional domains of {beta} and {beta} subunits of RNAP follow the Tree of Life. The presence of insertional domains can help establish a relative timeline of events in the evolution of a protein because insertion is inferred to post-date the base domain. We discuss mechanisms that might account for the discovery of homologous insertional domains in non-equivalent locations in bacteria and archaea.

evolutionary biology↗