Biology subjects

Huang, Y.

Publications and source records attributed to Huang, Y..

At least 253 records · Page 14Linked to original sources

bioRxiv2025

Beta bursts mediate amygdala gating of hippocampal emotional encoding

The amygdala and hippocampus are key structures in emotional processing, yet the transient neural dynamics coordinating their interaction remain poorly understood. We simultaneously recorded single-neuron activity and local field potentials from these regions in epilepsy patients performing an emotional image-rating task. Neurons in both areas exhibited firing rate changes predictive of subjective emotional valence. While conventional spectral analysis revealed no valence-specific patterns, beta bursts (13-30 Hz)--transient, high-power events-were uniquely modified by task features. In both regions, beta bursts were associated with increased gamma amplitude and enhanced phase coherence, with beta-gamma phase-amplitude coupling capturing emotion-related dynamics. Critically, amygdala beta bursts were associated with strong suppression of hippocampal firing, coinciding with interneuron activation, during negative valence/highest arousal processing, whereas hippocampal bursts showed no reciprocal influence. These findings suggest that beta bursts may represent a temporally precise neural correlate of emotional appraisal and a candidate mechanism for targeted neuromodulation in mood disorders.

neuroscience↗

bioRxiv2025

Single-cell neural network classifiers reveal that PM21 NK cell expansion is dependent on B cell signaling

In the field drug development ML/AI methods are being applied to improve drug production speed, costs, and reliability. In allogenic NK cell therapy production, one of the biggest challenges is the inherent variability in the donors that provide the starting material for NK cell expansion. In this study we performed PM21-mediated NK cell expansion on 26 donors, and in parallel performed single-cell transcriptomics on the same donor sample prior to expansion. Canonical differential expression analysis and cell state abundance did not highlight any significant difference between donors with high and low NK cell expansion yield. Instead, training neural networks classifiers for high-yield donors enabled identifying several highly predictive models with perfect cross-validation recall. Further investigation of the most predictive models unveiled a previously unknown role for B cell in supportive NK cell expansion. Overall, this study represents a blueprint for combining deep phenotyping and machine learning methods to unveil novel biology and improve the quality and speed of delivery of cell therapeutics to patients.

systems biology↗

bioRxiv2025

Compositional and Functional Profiling of the Gut Microbiome in Sarcoidosis

BackgroundSarcoidosis is a chronic inflammatory disease characterized by systematic granuloma formation, predominantly in the lungs. One leading hypothesis posits that prolonged exposure to microbial antigens may trigger chronic and dysregulated inflammation. Prior studies have examined the lung microbiota of sarcoidosis patients, but the role of the gut microbiota along the gut-immune axis remains largely unexplored. We elucidate the community composition and function of the gut microbiome in sarcoidosis. MethodsSubjects diagnosed with sarcoidosis (n=37) were recruited and matched with healthy control subjects (n=37). Stool samples were collected from sarcoidosis patients for metagenomic sequencing, followed by taxonomic classification and functional annotation as KEGG Orthology (KO) pathways. Differential analysis between sarcoidosis and control cohorts was performed using both standard and compositional approaches. ResultsSarcoidosis microbiomes exhibited similar alpha diversity but significantly different beta diversity from control microbiomes (p<0.05). At the phylum level, the proportion of Actinobacteria and Firmicutes expanded whereas Bacteroides and Verrucomicrobia proportionally shrunk in sarcoidosis gut microbiomes compared to healthy control ones. At the species level, 1,495 species were significantly more abundant and 279 less abundant in sarcoidosis compared to controls (FDR<0.05). Of these, 13 species demonstrated greater intergroup than intragroup variation (effect size>1), including microbes previously detected in the lungs and granulomas of sarcoidosis. Functional profiling revealed 409 KO pathways that were significantly underrepresented in sarcoidosis compared to control (FDR<0.05), of which 79 met an effect size > 1. These include pathways in amino acid and energy metabolism as well as HIF-1 signaling. ConclusionsOur findings highlight the potential role of gut microbiome composition and function in inflammatory processes that are associated with granuloma formation in sarcoidosis and warrant further investigation into gut hyperoxia-driven dysbiosis.

microbiology↗

bioRxiv2025

Re-evaluating the Impact of Biological Sex on Atherosclerosis in Apoe-/- and Ldlr-/- mice

BACKGROUNDThe progression of cardiovascular disease shows significant sexual dimorphism: although females generally develop the disease later in life, they exhibit a higher age-related incidence than males. Despite this clinical pattern, preclinical studies often overlook both sexes in their design, and existing research on sex-specific atherosclerosis in mice remains inconsistent. This study was designed to assess the influence of sex on atherosclerosis using two widely used atherosusceptible mouse models--Apoe-/- and Ldlr-/- mice. METHODSTo investigate the influence of sex on atherogenesis, we conducted a 20-week study using both male and female Apoe-/- and Ldlr-/- mice. The mice were fed an atherogenic ALMN diet (40% trans-fat, 2% cholesterol, 22% fructose) to promote plaque development. We performed comprehensive analyses of: (1) systemic metabolic parameters (lipid profile, glucose metabolism); (2) atherosclerotic burden (en face and aortic sinus plaque area); and (3) plaque composition (necrotic core size, collagen content, macrophage infiltration). RESULTSIn both models, male mice showed higher lipid levels, worse glucose tolerance, and reduced insulin sensitivity compared to females. Apoe-/- mice showed minimal sex differences in atherosclerosis with a trend toward increased plaque size in females. Plaque stability markers-- including collagen content, necrotic core size, and macrophage infiltration--did not differ significantly between sexes. In contrast, Ldlr-/- males exhibited greater en face plaque burden than females, yet plaque stability remained similar across sexes. CONCLUSIONComparative analysis of two widely used murine atherosclerosis models revealed genotype-dependent sexual dimorphism. Female Apoe-/- mice showed a non-significant trend toward larger plaque areas than males, whereas male Ldlr-/- mice developed significantly larger en face atherosclerotic plaques than females. By evaluating plaque area and composition across these models, our findings underscore the importance of including both sexes in atherosclerosis studies, in accordance with guidelines from the National Institutes of Health and the American Heart Association.

cell biology↗

bioRxiv2025

Analysis of Nutritional Components in Brown Sugar and Its Effects on Anti-fatigue, Alleviation of Qi Deficiency and Blood Stasis, and Antioxidant Effects

Brown sugar (BS), Red granulated sugar (RGS) and White sugar(WS) are three key sweeteners and food additives in China. Notably, BS possesses significant nutritional value and has been widely used in Chinese medicine for its supportive therapeutic properties.This study evaluated the anti-fatigue, the amelioration of qi deficiency and blood stasis, as well as the antioxidant activities of these sugars using a zebrafish model. BS and RGS demonstrated significantly greater efficacy than WS in terms of both anti-fatigue effects and amelioration of qi Deficiency and blood stasis in the zebrafish model. Antioxidant assays revealed that BS, RGS, and WS (500 g/mL) significantly enhanced superoxide dismutase (SOD) activity in zebrafish embryos compared with the control group. Furthermore, the mineral composition of sugar were determined. Nine mineral elements--potassium (K), calcium (Ca), sodium (Na), magnesium (Mg), iron (Fe), zinc (Zn), copper (Cu), phosphorus (P), and selenium (Se)--were analyzed. BS exhibited markedly higher concentrations of P, Ca, Fe, and Mg than RGS and WS, while selenium (detected at 50 mg/kg) was exclusively detected in BS. Intriguingly, RGS contained four-fold higher potassium levels than BS. Total polyphenol content, quantified by Folin-Ciocalteu assay, was 4.35 g/kg in BS and 1.53 g/kg in RGS, with no detectable polyphenols in WS.

biochemistry↗

bioRxiv2025

Bioinformatics-based stereochemical elucidation of MM 46115: an unusual antiviral spirotetronate that inhibits clathrin-mediated endocytosis

The influenza virus is a leading cause of respiratory tract infection in humans, with the emergence of antiviral drug resistance posing an ongoing challenge to the treatment of influenza. This underscores the urgent need for effective new antiviral treatments. Spirotetronates are a family of bacterial natural products with a range of potent bioactivities. Some members of this family have antiviral activity. Here, we report the bioinformatics-based stereochemical assignment, antiviral properties, and mechanism of action of the unusual type II spirotetronate MM 46115 (renamed pellemicin). We show that pellemicin is active against both influenza A and B viruses at non-toxic concentrations, and inhibits clathrin-mediated endocytosis, which is required for virus internalisation. Given the need for new treatments for viral infections, the results of our work suggest that pellemicin and related spirotetronates could provide a basis for developing promising alternatives to existing antivirals to combat drug-resistant influenza. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=199 SRC="FIGDIR/small/677008v1_ufig1.gif" ALT="Figure 1"> View larger version (42K): org.highwire.dtl.DTLVardef@177aacforg.highwire.dtl.DTLVardef@16f0b26org.highwire.dtl.DTLVardef@144f9dcorg.highwire.dtl.DTLVardef@16fe673_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIMM 46115 (here renamed pellemicin) produced by a mycetoma pathogen is a promising antiviral C_LIO_LIThe pellemicin biosynthetic gene cluster was identified in Actinomadura pelletieri DSM 43383 C_LIO_LISequence analysis of biosynthetic enzymes enabled full stereochemical assignment C_LIO_LIPellemicin inhibits clathrin-mediated endocytosis, an early stage of the viral life cycle C_LI SignificanceThe influenza virus is a respiratory pathogen with epidemic and pandemic potential, resulting in tens of thousands of deaths each year and causing significant health, social and economic impact. The rise of resistant influenza strains against existing antiviral drugs creates a pressing need for alternative treatments. Natural products - specialised metabolites of bacteria, fungi, and plants that often have antimicrobial activity - are a promising source of therapeutics to treat human disease. Here, we identify a cryptic polyketide biosynthetic gene cluster in the genome sequence of Actinomadura pelletieri DSM 43383, an Actinomycete that causes mycetoma in humans. This is proposed to direct production of the previously reported spirotetronate MM 46115 (here renamed pellemicin), which has activity against the influenza virus. Sequence analyses of a polyketide synthase and Diels-Alderase involved in pellemicin biosynthesis, combined with comparative analysis of NMR data for other spirotetronates, enabled us to fully resolve longstanding stereochemical ambiguities in the structure of pellemicin. This underscores the emerging power of bioinformatics-based approaches, and their complementarity to traditional spectroscopic methods, for natural product structure elucidation. We also report extensive insights into the antiviral properties and mechanism of pellemicin, demonstrating that it exhibits antiviral activity at non-toxic doses for up to eight hours after administration and inhibits clathrin-mediated endocytosis, a process that many viruses exploit to enter cells. Only one other bacterial natural product, ikarugamycin, is known to inhibit clathrin-mediated endocytosis. Ikarugamycin contains a tetramate group, which bears a close structural relationship to the tetronate moiety of pellemicin, suggesting that inhibition of clathrin-mediated endocytosis may be a general mechanism of action for antiviral spirotetronates. Our findings therefore indicate that pellemicin, and related spirotetronate natural products, could form a basis for development of new drugs to combat antiviral resistance, and serve as useful tools to study the process of endocytosis.

microbiology↗

bioRxiv2025

Effect of cortisol on cortical organoids: Building a "stress in a dish" model system

Exposure to chronic stress and traumatic experiences impacts brain health and development, which may lead to Post Traumatic Stress Disorder (PTSD), other mental health conditions, or altered resilience. Although certain behavioral and social factors have been associated resilience, little is known about the cellular and genomic mechanisms contributing to resilience or developing PTSD. Here, we present a novel model system called "Stress-in-a-dish" (SIAD) to study the molecular signature of chronic and acute stress in differentiated cortical organoids. Derived from human induced Pluripotent Stem Cells (iPSCs), mature organoids responded to cortisol with differential expression of genes. Many genes were associated with expected corticosteroid pathways, and some have not been previously linked to PTSD. A previously unknown potential contribution of astrocytes to the etiology of stress responses was also found. Our results suggest a novel paradigm for studying stress in a dish that opens up new opportunities to understand the biological basis of PTSD and resilience.

genomics↗

bioRxiv2025

Evolutionary remodeling of non-canonical ORF translation in mammals

Non-canonical open reading frames (ncORFs) are pervasive within transcripts annotated as "non-coding" or "untranslated regions" of mRNAs, yet their landscape under normal physiological conditions remains to be fully resolved, particularly outside humans. Here we applied a stringent and standardized pipeline to hundreds of high-quality ribosome profiling libraries from normal mammalian tissues and cell types, identifying 11,623 human and 16,485 mouse ncORFs. Evolutionary analyses revealed that thousands of ncORFs are subject to coding constraint and exhibit lineage-specific conservation, underscoring their functional potential. Ancient ncORFs are preferentially highly translated, broadly expressed, and enriched for lineage-specific conservation. Co-expression patterns further indicate that many ncORFs, especially ancient ones, are cotranslated with canonical coding sequences, consistent with functions mediated through protein-protein interactions. Together, these findings establish a comprehensive atlas of mammalian ncORFs and provide fundamental insights into their evolutionary dynamics and functional integration within the proteome.

genomics↗

bioRxiv2025

Multiomic profiling reveals pericyte and smooth muscle cell contributions to CADASIL pathology in cell-specific Notch3 mutant mice

Cerebral ischemic small vessel disease (SVD) is the leading cause of vascular dementia and a major contributor to stroke. Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is the most common monogenic form of familial SVD. CADASIL is caused by dominant missense mutations in Notch3, a receptor expressed in mural cells, including smooth muscle cells (SMCs) and pericytes. However, the cell-type specific contributions driving the CADASIL pathology remain unknown due to lack of animal models. Here, we generated two conditional knock-in mouse models carrying the CADASIL-causing Notch3R170C mutation selectively in SMC and brain pericytes. Both Notch3R170Cmodels showed perivascular accumulation of the NOTCH3 extracellular domain, yet developed distinct neurovascular changes depending on the affected cell type. Pericyte-specific Notch3R170C mice displayed pronounced region-selective microglial activation and vascular changes, whereas SMC-specific Notch3R170C mice showed localized perivascular gliosis with minimal vascular remodeling. Proteomic profiling of isolated brain vessels revealed largely unique cell-specific responses. Pericytes Notch3R170C expression dysregulated metabolic pathways, whereas SMC Notch3R170C expression induced immune signaling related pathways. Integration with single-cell RNA-seq data revealed that many of the proteomic and phosphoproteomic shifts might also include brain endothelial cells, including metabolic changes in the presence of pericyte Notch3R170C and inflammatory signaling in the presence of SMC-Notch3R170C. Together, these findings define mural cell-specific mechanisms that contribute to the CADASIL-associated vascular pathology.

neuroscience↗

bioRxiv2025

Visible Light-Controllable Surgical Hemostatic Adhesives Enabled by Vitamin B12-Stabilized Poly(α-Lipoic Acid)

Water-resistant adhesives are indispensable for biomedical applications, from surgical wound closure to internal hemostasis. While poly(-lipoic acid)-based adhesives show promise for their strong underwater adhesion, their clinical utility has been limited by uncontrolled polymerization-depolymerization dynamics. Here we present a visible light-controllable adhesive system enabled by a simple mix of -lipoic acid (LA) and vitamin B12 (i.e., adenosylcobalamin or AdoB12)--a photolabile compound--without resorting to any chemical modification. Benign visible light irradiation facilitates the cleavage of the C-Co bond and the subsequent formation of B12-thiolate complexes that stabilize LA polymers against depolymerization. The photoresponsive LA-AdoB12 adhesive system has proven highly effective in a wide range of surgical applications, achieving (1) strong bonding in porcine skin models in vitro, (2) reliable sealing of punctured organs (lung, heart and stomach) ex vivo, and (3) immediate hemostasis in active bleeding models such as topical, esophageal, and intestinal wounds in vivo. This work highlights a simple yet powerful strategy for creating visible light-controllable bioglues well-suited for diverse surgical applications.

bioengineering↗

bioRxiv2025

Effects of different proportions of ground corn and steam-flaked corn diets on growth performance, serum biochemical parameters, rumen fermentation and rumen microbial metagenome of yaks

This study objected to assess the effect of substituting ground corn (GC) with steam-flaked corn (SFC) at various ratios on growth performance, serum biochemistry, rumen fermentation, and microbiome in fattening yaks. Fifty male Maiwa yaks (196.43 {+/-} 16.08 kg) were randomly assigned to five groups: SFC 0, SFC 25, SFC 50, SFC 75, and SFC 100, representing 0%, 25%, 50%, 75%, and 100% substitution of GC with SFC. Results showed that the dry-matter intake (DMI) in SFC 0 group was significantly lower than those in other treatment groups (P < 0.05). Among the serum biochemical parameters, the triglyceride (TG) content in the SFC 100 group was significantly higher than other treatment groups (P < 0.05), with a quadratically increase (P < 0.05). Regarding rumen fermentation parameters, the propionate in the SFC 50 and SFC 100 groups was significantly higher than in the other groups (P < 0.05). At the phylum level of the rumen microbiome, the replacing with SFC significantly increased the relative abundance of Planctomycetota, Bacteria, and Candidatus_Saccharibacteria (P < 0.05). At the genus level, the replacing with SFC significantly increased the relative abundance of Paludibacteraceae and Bacteria (P < 0.05). Among the CAZy enzymes in the rumen, the relative abundance of cellulase modules (CM) in the SFC 0 group was significantly higher than other groups (P < 0.05). In conclusion, replacing 50% of GC with SFC may be an effective strategy to enhances growth performance in yak farming by improving rumen fermentation, microbiome composition, and carbohydrate-active enzymes. HighlightsO_LIThe replacement of GC with SFC can optimize rumen fermentation of yaks. C_LIO_LIThe replacement of GC with SFC in the diets affected the rumen microbiome of yaks. C_LIO_LIMetagenome profiled differences between CAZy enzymes and eggNOG functional proteins. C_LI

zoology↗

bioRxiv2025

The role of miR-9a in modulating sensory neuron morphology and mating behavior in Drosophila melanogaster.

Following mating, female Drosophila melanogaster display profound behavioral changes, including sensory sensitivity and rejection of courting males. The molecular mechanisms governing this plasticity remain incompletely understood. Here, we identify the conserved microRNA, miR-9a, as a critical regulator of this process. We show that miR-9a mutant females exhibit a premature rejection phenotype, mimicking mated-female behavior, which is correlated with an aberrant overgrowth of adult body wall sensory neurons. We demonstrate that this neuronal phenotype is governed by a dual regulatory system. First, in a non-cell autonomous mechanism, miR-9a expression in the epidermis is required to constrain sensory neuron dendrite growth, indicating that an epithelial-derived signal patterns the underlying neuron. Second, within the neuron itself, miR-9a interacts genetically with the transcription factor senseless (sens) and the novel RNA-binding protein bruno2 (bru2). Reducing the dosage of either sens or bru2 rescues both the neuronal and behavioral defects of miR-9a mutants. Our findings reveal an integrated, inter-tissue signaling axis where epithelial miR-9a orchestrates a non-cell autonomous cue that modulates a cell-intrinsic network to ensure the precise development of sensory neurons, thereby calibrating behavioral responses critical for reproductive success.

neuroscience↗

bioRxiv2025

Intrinsic interval timing, not temporal prediction, underlies ramping dynamics in visual and parietal cortex

Ramping neural activity is widely interpreted as a signature of predictive processing, but whether such signals truly reflect predictions or instead emerge from sensory mechanisms remains unclear. To address this question, we used two-photon calcium imaging across multiple cell types in visual and parietal cortex while awake mice passively received repeated audiovisual stimuli presented under distinct temporal structures. Neurons segregated into two broad response classes: stimulus-activated (ramp-down) and stimulus-inhibited (ramp-up) populations with diverse temporal kinetics. Multiple findings argued against a predictive interpretation: ramping activity was present in naive animals, neural responses changed immediately after short/long interval transitions, and unexpected stimulus timings elicited nearly identical responses in predictable and irregular contexts. Population analyses further showed that ramping reflected relaxation from stimulus-evoked activity rather than anticipatory buildup. Heterogeneous kinetics generated a robust population code for elapsed time. Together, these findings show that neural ramps during passive stimulation arise from stimulus-evoked dynamics that intrinsically generate temporal signals, rather than from temporal predictive processing. TeaserRamping activity in visual-parietal cortex during passive stimulation arises from sensory responses, not predictive mechanisms.

neuroscience↗

bioRxiv2025

TNF signaling drives expansion of Reg4+ epithelial cells in colitis.

Reg4+ secretory cells are upregulated in colitis and promote epithelial repair, but their regulation is poorly understood. We show that TNF-TNFR1 signaling controls Reg4+ cell numbers in mouse and human colonoids and in vivo, with TNFR1 deficiency reducing these cells and TNF restoring them dose-dependently. In UC patients and DSS-colitis, REG4+ cells mark regenerating crypts, and persistent REG4, DUOX2, and TNFR1 expression identifies non-responders to anti-TNF therapy. These findings reveal a TNFR1-dependent mechanism regulating Reg4+ cells and suggest potential strategies to improve therapeutic responses in IBD.

cell biology↗

bioRxiv2025

TNF Receptor 1 regulates colonic mesenchymal cell diversity and the epithelial stem cell niche.

BACKGROUND & AIMSAnti-tumor necrosis factor (anti-TNF) is a mainstay of inflammatory bowel disease (IBD) therapy but fails in many patients. Although TNF has pro-inflammatory effects, depletion of TNF receptor 1 (TNFR1) paradoxically exacerbates chronic colitis. Because colitis induces remodeling of mesenchymal cell populations, which provide a niche for epithelial stem cells involved in mucosal healing, we hypothesized that TNFR1 promotes colonic mesenchymal cell diversity and stem cell niche function. METHODSMesenchymal TNFR1 function was studied using TNFR1-/-, platelet derived growth factor receptor alpha (PDGFR)-Cre;TNFR1fl/fl mice, and mixed-genotype mesenchymal-epithelial co-cultures. Mesenchymal cell diversity and gene function were assessed using single-cell RNA-Seq of primary colonic myofibroblasts (CMFs) and via anti-integrin A6 (ITGA6) antibody treatment and exogenous R-spondin 3 (RSPO3) supplementation. RESULTSTNFR1-/- mesenchyme exhibits reduced cell diversity, with specific depletion of specialized TNF- and interferon-signaling pericryptal cell-type. Deletion of TNFR1 in the pericryptal mesenchyme diminished the (PDGFR)+ CMF population and reduced RSPO3 expression, but increased ITGA6 expression relative to controls (TNFR1+/-). Moreover, inhibition of ITGA6 reversed the proliferative and migratory phenotype of TNFR1-/- CMFs and restored expression of PDGFR and RSPO3. Co-cultures of colonoids with TNFR1-/- CMFs resulted in downregulation of stem cell marker expression; this was rescued by supplementation with RSPO3. Supporting the role for mesenchymal TNFR1 in regulating colonic epithelial stem cells, mice deficient for TNFR1 in PDGFR+ cells showed a 40% loss of Lgr5+ stem cells, consistent with the global TNFR1-deficient mouse. CONCLUSIONTNFR1-mediated signaling regulates specification and function of colonic mesenchyme, performing an integral role in the maintenance of the crypt stem cell population.

cell biology↗

bioRxiv2025

Chemo-mechanotherapy of fibrosis: dynamic control of biological materials through tissue-architecture-dependent crosslink disruption

Extracellular matrix (ECM) stiffness drives cell fate, but tissues are nonlinear and difficult to modify chemically without harming patients. Here, we show that nonlinear mechanical responses of fibrous and porous tissues can be controlled by mechanically modulating crosslinks. Through integrated in vivo, in vitro, and computational approaches, we found that physiological dynamic stretching disrupts pathological advanced glycation end-product (AGE) crosslink-induced fibrogenesis in an architecture-dependent manner. This was effective in lung-like porous scaffolds but not in liver-like fibrous matrices, revealing a critical structure-property relationship. Computational and in vitro models established that this modulates cell-ECM feedback, and that controlling mechanical crosslinking modulates key nonlinearity of networked solids. This discovery inspired a non-invasive, "mechanotherapuetic" ventilation protocol, which reversed pulmonary fibrosis in mice by physically disrupting ECM pathological crosslinks. The therapeutic efficacy was further amplified when combined with pharmacological AGE inhibition. These findings establish design principles for dynamically reprogrammable biological materials and mechano-targeted therapies.

bioengineering↗

bioRxiv2025

Spatial Single-Cell Atlas Reveals KSHV-Driven Broad Cellular Reprogramming, Progenitor Expansion, Immune and Vascular Remodeling in Kaposi's Sarcoma

Kaposis sarcoma (KS) is a highly inflammatory, angiogenic tumor driven by Kaposis sarcoma-associated herpesvirus (KSHV), yet the origins of tumor cells and mechanisms of progression remain unclear. Here, we present the first spatial single-cell atlas of KS, profiling 256 samples across patch, plaque, and nodular lesions and normal controls. We identify CD34 progenitor lymphatic endothelial cells (LECs) as the primary targets of KSHV, whose clonal expansion drives tumor growth. KSHV infection induces widespread cellular reprogramming across the tumor microenvironment, including LECs, vascular endothelial cells, fibroblasts, and macrophages, generating hybrid phenotypes that support angiogenesis, inflammation, and immune modulation. KSHV macrophages are enriched in tumor-proximal niches, further promoting a proangiogenic, immunosuppressive environment. Spatial analysis reveals evolving tumor-associated niches, with a core-to-periphery gradient correlating with infection, immune modulation, and cellular remodeling. We identify disease progression predictive signatures, offering mechanistic insights into KS pathogenesis and potential new therapeutic strategies by reprogramming the tumor microenvironment. Highlights CD34+ progenitor lymphatic endothelial cells are the primary KSHV target cells, with their clonal expansion driving Kaposis sarcoma growth. KSHV infection reprograms broad cell types into hybrid identities, and drives tumor-specific niche and vascular remodeling, endothelial plasticity, and immune modulation. KSHV-reprogrammed macrophages drive inflammation, angiogenesis, and immune modulation. Spatially resolved molecular and cellular signatures predict Kaposis sarcoma progression, offering novel therapeutic strategies targeting the tumor microenvironment.

cancer biology↗

bioRxiv2025

Novel Function of Arylalkalamine N-acetyltransfe- rase-1 in Modulating Host Coagulation and Blood Feeding in Aedes aegypti

During blood feeding, mosquitoes introduce substantial quantities of salivary proteins into their hosts to facilitate feeding. Arylalkylamine N-acetyltransferase-1 (aaNAT1) is a salivary protein prominently produced in the salivary glands of Aedes aegypti. Previous research has demonstrated that mosquitoes with AaaaNAT1 mutations fail to efficiently inhibit host blood coagulation; however, the precise regulatory mechanisms remain unknown. This study identified the primary metabolites and proteins interacting with AaaaNAT1 through integrated transcriptomic, proteomic, and metabolomic analyses. Combined with isothermal titration calorimetry (ITC), immunohistochemistry, ELISA, platelet function assays, and coagulation tests, we further established that AaaaNAT1 binds norepinephrine, reducing host platelet aggregation and thereby limiting activation of the host coagulation cascade and fibrinolytic system. Additionally, behavioral investigations showed that AaaaNAT1 knockdown in Aedes aegypti significantly prolonged the time required for female mosquitoes to locate a host and successfully obtain blood, while also markedly reducing blood consumption. This effect may stem from the inability of aaNAT1-depleted mosquitoes to effectively suppress host blood aggregation during feeding, as well as the downregulation of octopamine following AaaaNAT1 knockdown. Therefore, this study reveals a novel role for aaNAT1 distinct from its known functions in pigmentation and immunity, advancing our understanding of aaNAT1s role in insects.

molecular biology↗