Biology subjects

Hou, W.-H.

Publications and source records attributed to Hou, W.-H..

6 recordsLinked to original sources

bioRxiv2025

Computational and Experimental Identification of Potential Neutralizing Peptides Derived from Human ACE2 Against SARS-CoV-2 Infection

The human angiotensin-converting enzyme 2 (hACE2) is the primary receptor for the entry of SARS-CoV-2. Some human alleles of ACE2 exhibit an improved affinity for the SARS-CoV-2 Spike protein. However, the impact of ACE2 polymorphisms on SARS-CoV-2 infection remains unclear. Our previous study predicted that G431 and S514 in the receptor-binding domain (RBD) od SARS-CoV-2 S1 domain are important for S protein stability, and that S protein residues G496 and F497 and ACE2 residues D355 and Y41 are critical for the RBD-ACE2 interaction (1). In this study, we explored the potential of hACE2-derived neutralizing peptides as a therapeutic strategy against SARS-CoV-2 and investigated how ACE2 polymorphisms affect RBD-ACE2 binding affinity. We applied computational saturation mutagenesis to systematically screen the binding affinity changes among all possible ACE2 missense mutations within the ACE2-Wuhan-S1 complex. Mutations at ACE2 residues D355 and Y41 were predicted to weaken binding affinity, whereas those at N330 and D30 enhanced it. We identified six ACE2 regions (19-49, 65-102, 320-333, 348-359, 378-395, 552-563) to be vital for ACE2-RBD interaction. We synthesized peptides corresponding to these six regions and tested them using a pseudotyped viral particle system and dot blot assay. Three peptides were confirmed to bind with S protein, and four exhibited inhibitory effects. We aligned ACE2-Wuhan-S1 and ACE2-Omicron-S1 complexes, conducted correlation analysis, and observed similar binding patterns, suggesting that these peptides also have potential to neutralize Omicron strains. IMPORTANCESARS-CoV-2 continues its global spread. In this research, we identified six regions within ACE2 that are vital for interaction with the viral S RBD and have potential to neutralize SARS-CoV-2 infection. Among the six peptides derived from ACE2, three were confirmed to bind with S protein of Wuahan strain, and four exhibited inhibitory effects on Wuahn strain SARS-CoV-2. We also found ACE2 residues D355 and Y41 as weakening affinity, and N330 and D30 as enhancing it. We also aligned this complex with the ACE2-Omicron-S1 complex, performed correlation analyses, and compared their patterns of stability changes upon mutations, and obtained similar results, indicating that these peptides may also be effective against Omicron variants. These results provide insight into the role of ACE2 polymorphism in viral entry and suggest that hACE2-derived peptides may offer a promising therapeutic strategy against SARS-CoV-2, demonstrating strong consistency between our computational predictions and experimental outcomes.

microbiology↗

bioRxiv2025

Cholinergic disruption of state-dependent retrosplenial layer 1 activity causes temporal associative memory deficit under stress

Memory functions rely on discrete patterns of neuronal activity emerging from individual neurons, their interconnected circuits, and their alignment with global brain states. We show that such patterns are generated by layer 1 inhibitory neurons in the ventral retrosplenial cortex (vRSPL1), whose activity correlated with immobility and specifically contributed to the formation of temporal associative memories. This state-dependent activity was subject to stress-induced cholinergic modulation through muscarinic 1 receptor (M1R) signaling, leading to selective impairments in temporal but not contextual associative memory. Slice studies showed that these effects were likely due to M1R-mediated inhibition of vRSPL1 neurons, transiently disrupting their local connectivity as well as responsiveness to afferent input. Together, we demonstrate a mechanism by which vRSPL1 activity aligned to immobility coordinate the formation of temporal associations. Through its sensitivity to stress-related cholinergic modulation, this mechanism presents vulnerability to traumatic amnesia, especially for temporal details of episodic memories.

neuroscience↗

bioRxiv2024

Glioblastoma cells imitate neuronal excitability in humans

BackgroundGlioblastomas are renowned for their pronounced intratumoral heterogeneity, characterized by a diverse array of plastic cell types. However, the physiological and transcriptomic features of the cells residing in the invasive leading edge (LE), including both neurons and glioblastoma cells (GBCs), remain unclear, challenging our comprehension of the glioblastoma pathophysiology. MethodsTo elucidate molecular and morphophysiological features of LE cells, we established an experimental workflow enabling the investigation of GBCs and neurons within cancer-infiltrated organotypic tissue specimens from the same patients. With this approach, we characterized the electrophysiological properties of cells in the neocortical tumor LE (LE cells). We further performed single-cell Patch-seq experiments, enabling transcriptomic analysis of electrophysiologically recorded LE cells. ResultsUpon depolarization, 58% of LE cells exhibited aberrant action potentials (aAPs). Electrophysiological assessment showed that a subset of GBCs generated aAPs, with no significant differences in aAP properties compared to LE neurons. Transcriptomic analysis of 144 LE cells revealed four transcriptomic clusters, including two GBC populations and two neuronal populations. LE GBCs exhibited diverse cellular states, including mesenchymal-like, astrocyte-like, neural progenitor-like, and oligodendrocyte-precursor cell-like phenotypes. Notably, LE GBCs exhibiting aAPs displayed reduced mitotic pathway activity and developmental regulatory ion channel CaV1.2. Cell-cell interaction analysis illustrates a higher signaling interaction between aAP LE cells compared to no-aAP LE cells. ConclusionIn summary, we find comparable electrical properties between neurons and a subset of GBCs in the leading edge, suggesting an active electrophysiological role of GBCs in the tumors pathophysiology. Key PointsO_LIHuman organotypic slice cultures enable long-term functional investigation of glioblastoma cells. C_LIO_LIGBCs and neurons in the LE exhibit similar aAPs. C_LIO_LILE GBCs display heterogeneous cellular states, with reduced proliferation signaling in aAP GBCs. C_LI Importance of studyThis study sheds light on the diverse pathophysiological and molecular features of cells in the neocortical infiltration zone of glioblastoma. By utilizing in vitro organotypic human brain slice cultures, a reliable platform for longitudinal observation, we unveiled the dichotomy of the electrical properties of LE cells. More than half of LE cells display aAP, contradicting findings from cultured tumor cells and animal models. Patch-seq analysis confirmed that both GBCs and neurons in the LE generate aAPs with indistinguishable electrical properties. aAP GBCs showed higher cell-cell interactions. We find aAP GBCs to express reduced proliferation signaling compared to no-aAP GBCs, suggesting a non-dividing and potentially more plastic cell state. These findings point to the electrical-active GBCs as an important attribute of the LE, linking the electrophysiological properties with functional implications, and implicate an active role of electrophysiological changes of GBCs in tumor pathophysiology.

cancer biology↗

bioRxiv2024

A combinatory genetic strategy for targeting neurogliaform neurons in the mouse basolateral amygdala

The mouse basolateral amygdala (BLA) contains various GABAergic interneuron subpopulations, which have distinctive roles in the neuronal microcircuit controlling numerous behavioral functions. In mice, roughly 15% of the BLA GABAergic interneurons express neuropeptide Y (NPY), a reasonably characteristic marker for neurogliaform cells (NGFCs) in cortical-like brain structures. However, genetically labeled putative NPY-expressing interneurons in the BLA yield a mixture of interneuron subtypes besides NGFCs. Thus, selective molecular markers are lacking for genetically accessing NGFCs in the BLA. Here, we validated the NGFC-specific labeling with a molecular marker, neuron-derived neurotrophic factor (NDNF), in the mouse BLA, as such specificity has been demonstrated in the neocortex and hippocampus. We characterized genetically defined NDNF-expressing (NDNF+) GABAergic interneurons in the mouse BLA by combining the Ndnf-IRES2-dgCre-D transgenic mouse line with viral labeling, immunohistochemical staining, and in vitro electrophysiology. We found that BLA NDNF+ GABAergic cells mainly expressed NGFC neurochemical markers NPY and reelin (Reln) and exhibited small round soma and dense axonal arborization. Whole-cell patch clamp recordings indicated that most NDNF+ interneurons showed late spiking and moderate firing adaptation. Moreover, [~]81% of BLA NDNF+ cells generated retroaxonal action potential after current injections or optogenetic stimulations, frequently developing into persistent barrage firing. Optogenetic activation of the BLA NDNF+ cell population yielded both GABAA- and GABAB receptor-mediated currents onto BLA pyramidal neurons (PNs). We demonstrate a combinatory strategy combining the NDNF-cre mouse line with viral transfection to specifically target adult mouse BLA NGFCs and further explore their functional and behavioral roles.

neuroscience↗

bioRxiv2023

Inhibitory fear memory engram in the mouse central lateral amygdala

Engrams are cellular substrates of memory traces that have been identified in various brain areas, including the amygdala. Most engrams identified so far are formed by excitatory, glutamatergic neurons. However, little attention has been paid to defining GABAergic inhibitory engrams. Here, we report an inhibitory engram in the central lateral amygdala (CeL), a crucial area for Pavlovian fear conditioning. This engram is primarily composed of GABAergic somatostatin-expressing (SST+) and to a lesser extent of protein kinase C-{delta}-expressing [PKC-{delta}(+)] neurons. Fear memory is accompanied by a preferential enhancement of mIPSC frequency onto PKC-{delta}(+) neurons as well as a general increment of amplitude. Moreover, non-engram cells exhibit higher mIPSC frequency than engram cells. The inhibition of the CeL GABAergic engram disinhibits the activity of engram-targeted areas and increases selectively the encoded fear expression. Our data defines the behavioral function of an engram formed exclusively by GABAergic inhibitory neurons in the mammalian CNS.

neuroscience↗

bioRxiv2023

Non-Hebbian plasticity produces long-lasting associative memories

The dominant models of learning and memory, such as Hebbian plasticity, propose that experiences are transformed into memories through input-specific synaptic plasticity at the time of learning. However, synaptic plasticity is neither strictly input specific nor restricted to the time of its induction. The impact of such forms of non-Hebbian plasticity on memory has been difficult to test, hence poorly understood. Here, we demonstrate that synaptic manipulations can deviate from the Hebbian model of learning, yet produce a lasting memory. First, we established a weak associative conditioning protocol in mice, where optogenetic stimulation of sensory thalamic input to the amygdala was paired with a footshock, but no detectable memory was formed. However, when the same input was potentiated minutes before or after, or even 24 hours later, the associative experience was converted to a lasting memory. Importantly, potentiating an independent input to the amygdala minutes but not 24 hours after the pairing produced a lasting memory. Thus, our findings suggest that the process of transformation of a transient experience into a memory is neither restricted to the time of the experience nor to the synapses triggered by it; instead, it can be influenced by past and future events.

neuroscience↗