Biology subjects

Hotaling, S.

Publications and source records attributed to Hotaling, S..

26 records · Page 2Linked to original sources

bioRxiv2020

Aquatic insects are dramatically underrepresented in genomic research

Aquatic insects comprise 10% of all insect diversity, can be found on every continent except Antarctica, and are key components of freshwater ecosystems. Yet aquatic insect genome biology lags dramatically behind that of terrestrial insects. If genomic effort was spread evenly, one aquatic insect genome would be sequenced for every [~]9 terrestrial insect genomes. Instead, [~]24 terrestrial insect genomes have been sequenced for every aquatic insect genome. This discrepancy is even more dramatic if the quality of genomic resources is considered; for instance, while no aquatic insect genome has been assembled to the chromosome level, 29 terrestrial insect genomes spanning four orders have. We argue that a lack of aquatic insect genomes is not due to any underlying difficulty (e.g., small body sizes or unusually large genomes) yet it is severely hampering aquatic insect research at both fundamental and applied scales. By expanding the availability of aquatic insect genomes, we will gain key insight into insect diversification and empower future research for a globally important taxonomic group. Simple SummaryAquatic insects comprise 10% of all insect diversity, can be found on every continent except Antarctica, and are key components of freshwater ecosystems. Yet aquatic insect genome biology lags dramatically behind that of terrestrial insects. If genomic effort was spread evenly, one aquatic insect genome would be sequenced for every [~]9 terrestrial insect genomes. Instead, [~]24 terrestrial insect genomes have been sequenced for every aquatic insect genome. We argue that the limited availability of aquatic insect genomes is not due to practical limitations--e.g., small body sizes or overly complex genomes--but instead reflects a lack of research interest. We call for targeted efforts to expand the availability of aquatic insect genomic resources to gain key molecular insight into insect diversification and empower future research.

genomics↗

bioRxiv2020

Cold tolerance of mountain stoneflies (Plecoptera: Nemouridae) from the high Rocky Mountains

ABSTRACTHow aquatic insects cope with cold temperatures is poorly understood. This is particularly true for high-elevation species that often experience a seasonal risk of freezing. In the Rocky Mountains, nemourid stoneflies (Plecoptera: Nemouridae) are a major component of mountain stream biodiversity and are typically found in streams fed by glaciers and snowfields, which due to climate change, are rapidly receding. Predicting the effects of climate change on mountain stoneflies is difficult because their thermal physiology is largely unknown. We investigated cold tolerance of several alpine stoneflies (Lednia tumana, Lednia tetonica, and Zapada spp.) from the Rocky Mountains, USA. We measured the supercooling point (SCP) and tolerance to ice enclosure of late-instar nymphs collected from a range of thermal regimes. SCPs varied among species and populations, with the lowest SCP measured for nymphs from an alpine pond, which is much more likely to freeze solid in winter than flowing streams. We also show that L. tumana cannot survive being enclosed in ice, even for short periods of time (less than three hours) at relatively mild temperatures (−0.5 °C). Our results indicate that high-elevation stoneflies at greater risk of freezing may have correspondingly lower SCPs, and despite their common association with glacial meltwater, they appear to be living near their lower thermal limits.Competing Interest StatementThe authors have declared no competing interest.View Full Text

physiology↗

bioRxiv2019

Mountain stoneflies may tolerate warming streams: evidence from organismal physiology and gene expression

Rapid glacier recession is altering the physical conditions of headwater streams. Stream temperatures are predicted to rise and become increasingly variable, putting entire meltwater-associated biological communities at risk of extinction. Thus, there is a pressing need to understand how thermal stress affects mountain stream insects, particularly where glaciers are likely to vanish on contemporary timescales. In this study, we tested the critical thermal maximum (CTMAX) of stonefly nymphs representing multiple species and a range of thermal regimes in the high Rocky Mountains, USA. We then collected RNA-sequencing data to assess how organismal thermal stress translated to the cellular level. Our focal species included the meltwater stonefly, Lednia tumana, which was recently listed under the U.S. Endangered Species Act due to climate-induced habitat loss. For all study species, critical thermal maxima (CTMAX > 20{degrees}C) far exceeded the stream temperatures mountain stoneflies experience (< 10{degrees}C). Moreover, while evidence for a cellular stress response was present, we also observed constitutive expression of genes encoding proteins known to underlie thermal stress (i.e., heat shock proteins) even at low temperatures that reflected natural conditions. We show that high-elevation aquatic insects may not be physiologically threatened by short-term exposure to warm temperatures and that longer term physiological responses or biotic factors (e.g., competition) may better explain their extreme distributions.

physiology↗

bioRxiv2019

To composite or replicate: how sampling method and protocol differences alter stream bioassessment metrics

Aquatic invertebrates are excellent indicators of ecosystem quality; however, choosing a sampling method can be difficult. Each method and associated protocol has advantages and disadvantages, and finding the approach that minimizes biases yet fulfills management objectives is crucial. To test the effects of both sampling methods and sample handling - i.e., to composite samples or leave them as replicates - we collected aquatic invertebrates from the Niobrara River at Agate Fossil Beds National Monument, Nebraska using three methods and two sample handling protocols. We compared aquatic invertebrate assemblages collected with a Hester-Dendy multi-plate sampler, Hess sampler and a D-frame dipnet. We calculated six common bioassessment metrics from composite (combined) and replicate (separate) samples. Hess samples contained the highest taxonomic richness (capturing 77% of all taxa observed) and dipnet samples the least (47%). Hester-Dendy samples had the greatest proportion of Ephemeroptera, and Ephemeroptera, Plecoptera and Trichoptera (EPT). Dipnet samples had the lowest evenness values. In terms of sample handling, composite samples had inflated richness, diversity and evenness compared to replicate samples, but bioassessment metrics calculated from proportions or averages (i.e. Hilsenhoffs Biotic Index and the proportion of EPT taxa) did not differ between them. The proportion of invertebrate groups from composite samples were not statistically different among sampling methods, but several groups differed between replicate samples collected by different methods. Ultimately, we recommend collecting replicate samples with a Hess sampler when the goal of the study is to detect ecosystem change, among locations or differences in variables of interest.

ecology↗

bioRxiv2019

Headwaters fed by subterranean ice: potential climate refugia for mountain stream communities?

Near-term extirpations of macroinvertebrates are predicted for mountain streams worldwide as a warming climate drives the recession of high-elevation ice and snow. However, hydrological sources likely vary in their resistance to climate change and thus streams fed by more resistant sources could persist as climate refugia for imperiled biota. In 2015-2016, we measured habitat characteristics and quantified macroinvertebrate community structure along six alpine streams in the Teton Range, Wyoming, USA. Strong differences in habitat characteristics (e.g., temperature, bed stability, conductivity) confirmed three major stream sources: surface glaciers, perennial snowfields, and subterranean ice. Subterranean ice-fed streams - termed "icy seeps" - appear common in the Teton Range and elsewhere yet are globally understudied. Midges in the family Chironomidae dominated our study sites, representing 78.6% of all specimens sampled, with nematodes, caddisflies (Neothremma), and mayflies (Epeorus) also common. At the community-scale, glacier-and snowmelt-fed streams differed significantly in multivariate space, with icy-seep communities intermediate between them, incorporating components of both assemblages. Because the thermal environment of subterranean ice, including rock glaciers, is decoupled from large-scale climatic conditions, we predict that icy seeps will remain intact longer than streams fed by surface ice and snow. Furthermore, our results suggest that icy seeps are suitable habitat for many macroinvertebrates occupying streams fed by vulnerable hydrological sources. Thus, icy seeps may act as key climate refugia for mountain stream biodiversity, an idea in need of further investigation.

ecology↗

bioRxiv2019

Rolling stones gather moss: Movement and longevity of moss balls on an Alaskan glacier

Glaciers support diverse ecosystems that are largely comprised of microbial life. However, at larger, macroscopic scales, glacier moss balls (sometimes called "glacier mice") can develop from impurities on ice surfaces and represent a relatively rare biological phenomenon. These ovoid-shaped conglomerations of dirt and moss are only found on some glacier surfaces and provide key habitats for invertebrate colonization. Yet, despite their development and presence being widely reported, no targeted studies of their movement and persistence across years have been conducted. This knowledge gap is particularly important when considering the degree to which glacier moss balls may represent viable, long-term biotic habitats on glaciers, perhaps complete with their own ecological succession dynamics. Here, we describe the movement and persistence of glacier moss balls on the Root Glacier in southcentral Alaska, USA. We show that glacier moss balls move an average of 2.5 cm per day in herd-like fashion, and their movements are positively correlated with glacier ablation. Surprisingly, the dominant moss ball movement direction does not align with the prevailing wind or downslope directions, nor with any dominant direction of solar radiation. After attaining a mature size, glacier moss balls persist for many years, likely in excess of 6 years. Finally, we observed moss ball formation on the Root Glacier to occur within a narrow, low albedo stripe downwind of a nunatuk, a potential key source of moss spores and/or fine-grained sediment that interact to promote their formation.

ecology↗

bioRxiv2018

Long-distance dispersal, ice sheet dynamics, and mountaintop isolation underlie the genetic structure of glacier ice worms

Disentangling the contemporary and historical factors underlying the spatial distributions of species is a central goal of biogeography. For species with broad distributions but little capacity to actively disperse, disconnected geographic distributions highlight the potential influence of passive, long-distance dispersal (LDD) on their evolutionary histories. However, dispersal alone cannot completely account for the biogeography of any species, and other factors-e.g., habitat suitability, life history-must also be considered. North American ice worms (Mesenchytraeus solifugus) are ice-obligate annelids that inhabit coastal glaciers from Oregon to Alaska. Previous studies identified a complex biogeographic history for ice worms, with evidence for genetic isolation, unexpectedly close relationships among geographically disjunct lineages, and contemporary migration across large (> 1,500 km) areas of unsuitable habitat. In this study, we analyzed genome-scale sequence data for most of the known ice worm range. We found clear support for divergence between populations along the Pacific Coast and the inland flanks of the Coast Mountains (mean FST = 0.60), likely precipitated by episodic ice sheet expansion and contraction during the Pleistocene. We also found support for LDD of ice worms from Alaska to Vancouver Island, perhaps mediated by migrating birds. Our results highlight the power of genomic data for disentangling complex biogeographic patterns, including the presence of LDD.

evolutionary biology↗

bioRxiv2018

Nuclear and mitochondrial genomic resources for the meltwater stonefly, Lednia tumana (Plecoptera: Nemouridae)

AbstractWith more than 3,700 described species, stoneflies (Order Plecoptera) are an important component of global aquatic biodiversity. The meltwater stonefly Lednia tumana (Family Nemouridae) is endemic to alpine streams of Glacier National Park and has been petitioned for listing under the U.S. Endangered Species Act (ESA) due to climate change-induced loss of alpine glaciers and snowfields. Here, we present de novo assemblies of the nuclear (~520 million base pairs [bp]) and mitochondrial (13,752 bp) genomes for L. tumana. The L. tumana nuclear genome is the most complete stonefly genome reported to date, with ~71% of genes present in complete form and > 4,600 contigs longer than 10 kilobases (kb). The L. tumana mitochondrial genome is the second for the family Nemouridae and the first from North America. Together, both genomes represent important foundational resources, setting the stage for future efforts to understand the evolution of L. tumana, stoneflies, and aquatic insects worldwide.

genomics↗