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Horvat, L.

Publications and source records attributed to Horvat, L..

2 recordsLinked to original sources

IqgD is a Rac1-interacting IQGAP required for efficient growth of Dictyostelium discoideum on bacterial lawns

IQGAPs are large multidomain scaffold proteins that interact with the Rho family GTPases Cdc42 and Rac1, functioning both as their effectors and as regulators by stabilizing their active GTP-bound state. In this study, we analyzed the function of IqgD, an IQGAP-related protein from the professional phagocyte Dictyostelium discoideum. IqgD contains a calponin homology domain (CHD), a GAP-related domain (GRD), and a RasGAP C-terminal (RGCt) domain. We show that the CHD is essential for F-actin binding and cortical localization, whereas the GRD and RGCt domains mediate interactions with Rac1 GTPases and the actin-bundling proteins cortexillins. Moreover, similar to mammalian IQGAPs, IqgD maintains Rac1 in its active conformation. IqgD is enriched in macropinocytic and phagocytic cups and co-localizes with F-actin and active Rac1 in the ring-like structure that forms around surface-bound particles at the cell bottom. Loss of IqgD results in markedly reduced growth on bacterial lawns and significantly smaller cell size. While mutant cells internalize bacteria from suspension as efficiently as wild-type cells, they display a strong defect in phagocytosis of surface-bound particles, accompanied by decreased adhesion to the cell substrate. Together, our data show that although IqgD localizes to macroendocytic cups, it is dispensable for macropinocytosis and phagocytosis of suspended particles. Instead, IqgD is specifically required for efficient phagocytosis of surface-bound particles, likely by facilitating robust F-actin polymerization at the cell bottom to generate the force necessary for detachment of surface-bound bacteria. Significance StatementPhagocytosis of surface-bound microbes is essential for host defense and environmental feeding strategies, yet its underlying mechanisms remain poorly understood. We identify the IQGAP-related protein IqgD in D. discoideum as a key factor required for efficient uptake of bacteria attached to solid surfaces. IqgD localizes to an F-actin- and Rac1-rich circular structure analogous to the phagocytic adhesion ring (PAR) recently described in mammalian macrophages, suggesting that this mode of force-driven particle detachment is evolutionarily conserved. Our findings provide mechanistic insight into substrate-dependent phagocytosis and establish IqgD as a central regulator of this process.

cell biology↗

Dynamic evolution of satellite DNAs drastically differentiates the genomes of Tribolium sibling species

Tandemly repeated satellite DNAs (satDNAs) are among the most abundant and fastest-evolving eukaryotic sequences, but the way they model genomes is still elusive. Here, we investigated the evolutionary dynamics of satDNAs in the extremely satDNA-rich genomes of two closely related Tribolium insects that produce sterile hybrids. In Tribolium freemani, we identified 135 satDNAs, accounting for 38.7% of the genome. Comparative analysis with the Tribolium castaneum satellitome revealed that the drastic difference happened in their centromeric regions, which share orthologous organization hallmarked by totally different major satDNAs but related minor satDNAs. The T. freemani male sex chromosome, which lacks the major satDNA but contains a minor-like satDNA, further heightened the question of which satDNA is centromere-competent. By analyzing the long-range organization of the centromeric regions, we revealed that both the major and minor satDNA arrays exhibit a strong tendency toward macro-dyad symmetry, suggesting that the secondary structures in the centromeres may be more important than the primary sequence itself. We found evidence that the centromeric satDNAs of T. freemani occur in extrachromosomal circular DNAs, which may contribute to their expansion and homogenization between non-homologous chromosomes. We also identified numerous low-copy-number satDNAs that are orthologous between the siblings, some of which are associated with transposable elements, highlighting transposition as a mechanism of their spreading. The dynamic evolution of satDNAs has clearly influenced the differentiation of Tribolium genomes, but the question remains whether the differences in their satDNA profiles are a cause or consequence of speciation.

genomics↗