bioRxiv Science⌕ Search

Biology subjects

Hogan, K.

Publications and source records attributed to Hogan, K..

3 recordsLinked to original sources

Abbapolin inhibitors of the PLK1 PBD as Prostate Cancer Therapeutics, in vivo activity and synergy with androgen therapy

Polo-like kinase 1 (PLK1) is an established therapeutic target in cancer; however, ATP-competitive kinase inhibitors have shown limited clinical success because of toxicity, acquired resistance, and incomplete inhibition of non-catalytic PLK1 functions. Targeting the Polo-box domain (PBD), which regulates PLK1 localization and substrate recognition, represents an alternative therapeutic strategy but has been hindered by the lack of selective, cell-active small molecules. Here, the optimization and biological characterization of abbapolins, a series of non-peptidic PLK1 PBD inhibitors developed using the REPLACE strategy are described. Structure-guided optimization and screening across the NCI-60 cancer cell panel identified compounds with preferential activity against prostate cancer cells. Proteomic analyses demonstrated that cellular sensitivity correlated with PLK1 protein abundance, supporting an on-target mechanism of action. Abbapolins directly engaged PLK1 in cells, induced selective degradation of endogenous PLK1, and suppressed long-term clonogenic growth. Lead compounds demonstrated favorable pharmacokinetic properties and significantly inhibited prostate tumor growth in xenograft models without detectable systemic toxicity. PLK1 abundance was significantly reduced in treated tumors and correlated with tumor response, identifying PLK1 degradation as a potential pharmacodynamic biomarker. Abbapolins also synergized with enzalutamide in castration- resistant prostate cancer cells, supporting their potential as combination therapies for advanced disease. Collectively, these studies establish selective inhibition of the PLK1 Polo-box domain as a viable therapeutic strategy, provide in vivo proof-of-concept for the REPLACE approach, and identify abbapolins as promising leads for advanced prostate cancer.

cancer biology↗

Epigenetic genes are differentially methylated in the blood of persons with mild cognitive impairment and Alzheimers disease

BackgroundEnvironmental factors play a role in AD pathology and are mediated by changes in DNA methylation levels. Methods and ResultsWe investigated whole genome methylation sequencing (WGMS) data from the blood of participants with mild cognitive impairment (MCI, N=99), late onset dementia due to Alzheimers disease (AD, N=109), and who are cognitively unimpaired (CU, N=174) to test for differential methylation in 812 genes with roles in epigenetic regulation (e.g., DNA methylation and demethylation, chromatin remodeling, histone modification, and RNA modification) curated from the EpiFactors 2.1 database. 71/812 genes were differentially methylated comprising 190 unique differentially methylated positions (DMPs) in MCI (MCI vs. CU pairwise comparison). 60/812 genes were differentially methylated comprising 220 DMPs in AD (AD vs. CU pairwise comparison). The majority of differentially methylated genes in both MCI (41/71) and AD (33/60) were histone modification genes and 23 differentially methylated genes were shared in both pairwise comparisons. 96 genes were differentially methylated comprising 243 DMPs between persons with MCI and AD (AD vs. MCI pairwise comparison). 10 differentially methylated genes were shared between the 3 pairwise comparisons, including CUGBP elav-like family member 2 (CELF2), histone deacetylase 9 (HDAC9), RNA binding fox-1 homolog 1 (RBFOX1), TATA-box binding protein associated factor 4 (TAF4), and thymine DNA glycosylase (TDG). ConclusionGenes that participate in the epigenetic regulation of gene expression, particularly histone modifications, are differentially methylated in blood between persons with and without MCI and AD, warranting further elucidation of their role in the molecular pathogenesis of cognitive decline.

genomics↗

Sex-Specific Differential DNA Methylation in Mild Cognitive Impairment and Alzheimers Disease

Sex differences in late-onset Alzheimers disease (AD) progression include accelerated decrements in cognitive status and greater amyloid and tau biomarker burdens in females. To identify sex-specific differentially methylated positions (DMPs) and genes in persons with mild cognitive impairment (MCI) and AD, we analyzed whole genome methylation sequencing on blood samples from participants with MCI (N=99, 52% female), AD (N=109, 43% female), and those cognitively unimpaired (CU; N=174, 52% female). Ninety-four percent of DMPs from MCI vs. CU, AD vs. CU, and AD vs. MCI pairwise comparisons were sex-specific. Female-specific DMPs were enriched in neurologic gene sets (e.g., synaptic membrane, ion channel complex), while male-specific DMPs showed limited enrichment. Sex-specific DMPs overlapped blood-specific enhancers, promoters, and transcription factor binding motifs, highlighting divergent epigenetic regulation by sex. These findings identify sex-specific genes and molecular pathways in MCI and AD and support that blood DNA methylation levels can distinguish cognitive status.

genomics↗