Biology subjects

Hoerndli, F. J.

Publications and source records attributed to Hoerndli, F. J..

5 recordsLinked to original sources

bioRxiv2026

Overexpressing FLP Recombinase Can Cause Synaptic Trafficking Defects in C. elegans

Site-specific recombinases, such as Cre recombinase (Cre) and FLP recombinase (FLPase), are popular tools that enable precise spatiotemporal control over fluorescent reporter genes. However, studies show that increased Cre expression can lead to cytotoxic phenotypes including DNA damage, cell cycle arrest, cell death, and aneuploidy. In contrast, there is little-to-no known cytotoxicity associated with FLPase. FLPase is considered to be the safer, if less efficient, recombinase. To compensate for decreased efficiency, researchers will often increase expression of the FLPase to ensure a complete gene edit. Despite previous evidence that FLPase is nontoxic at high doses, we report that high expression of FLPase from multi-copy extrachromosomal arrays can disrupt synaptic protein trafficking in C. elegans. We discovered several off-target effects of high FLPase expression including mislocalization of the pre-synaptic marker FLPon::mScarlet::SYD-2 and decreased synaptic abundance, transport, and expression of the ionotropic glutamate receptor subunit GLR-1. Neither overexpression of an inactive FLPase, low activity FLPase, nor mCherry under the same promoter elicited these effects. However, single-copy expression of the FLPase construct reliably tags FLPon::mScarlet::SYD-2 and does not lead to these off-target effects. This work supports growing awareness that tyrosine recombinases can become cytotoxic at high doses.

neuroscience↗

bioRxiv2026

Activity-Dependent Postsynaptic Mitochondrial ROS Signaling Drives Avoidance Plasticity in C. elegans

Reactive oxygen species (ROS) are signaling molecules involved in neuronal excitatory function, with mitochondrial ROS (mitoROS) playing key roles in metabolic regulation and stress responses. Studies have shown that neuronal activity upregulates mitoROS production through oxidative phosphorylation, but it remains unclear if and how acute elevations in mitoROS influence synaptic plasticity. Here, we develop an avoidance sensitization paradigm in C. elegans using optogenetic excitation and training of nociceptive ASH neurons to initiate avoidance reversals by downstream activation of the AVA command interneurons. Using this paradigm, we show that the probability of reversal to light stimulation increases 4-hours after optogenetic training, indicating behavioral sensitization. This avoidance sensitization is accompanied by an increase of surface glutamate receptor (GLR-1) levels at ASH-AVA synapses which is dependent on postsynaptic expression of GLR-1 and active transcription. Interestingly, we find that somatic and nerve ring mitochondria produce ROS after optogenetic training. We show that this mitochondrial ROS (mitoROS) peak is dependent on postsynaptic GLR-1 and MCU-1 function during optogenetic training and is necessary for avoidance sensitization. Finally, we demonstrate that postsynaptic signaling by mitoROS in AVA is sufficient to induce avoidance sensitization. Postsynaptic photoactivation of mitochondria-targeted Killer Red in AVA, calibrated to produce the mitoROS peak observed during training, induces avoidance sensitization bypassing optogenetic training and MCU-1 requirement. Our results indicate that activity-dependent mitoROS signaling can instruct synaptic strengthening and directly modulate circuit function and behavior. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/730457v2_ufig1.gif" ALT="Figure 1"> View larger version (113K): org.highwire.dtl.DTLVardef@91f9bborg.highwire.dtl.DTLVardef@1a274b1org.highwire.dtl.DTLVardef@9b394forg.highwire.dtl.DTLVardef@cf8b7d_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

bioRxiv2024

A low-abundance class of Dicer-dependent siRNAs produced from a variety of features in C. elegans

Canonical small interfering RNAs (siRNAs) are processed from double-stranded RNA (dsRNA) by the endoribonuclease Dicer. siRNAs are found in plants, animals, and some fungi where they associate with Argonautes to direct RNA silencing. In Caenorhabditis elegans, some endogenous small RNAs, such as 22G-RNAs and 26G-RNAs, share certain attributes with canonical siRNAs but exhibit unique characteristics known only to occur in nematodes. For instance, 22G-RNAs do not originate from dsRNA and are not processed by Dicer, whereas 26G-RNAs require Dicer but lack the typical duplex intermediate with symmetrical 3-overhangs and are produced only antisense to their mRNA templates. To identify canonical siRNAs in C. elegans, we first characterized the siRNAs produced from exogenous dsRNA. As predicted based on earlier studies, exogenous dsRNA is processed into [~]23-nt duplexes with 2-4-nt 3-overhangs, ultimately yielding siRNAs devoid of 5 G-containing sequences that bind with high affinity to the Argonaute RDE-1. Leveraging these characteristics, we searched for their endogenous counterparts and identified thousands of endogenous loci representing dozens of unique elements that give rise to mostly low to moderate levels of siRNAs, called 23H-RNAs. These loci include repetitive elements, alleged coding genes, pseudogenes, non-coding RNAs, and unannotated features, many of which adopt hairpin structures reminiscent of the hpRNA/RNA interference (RNAi) pathway in flies and mice. Our results expand the known repertoire of C. elegans small RNAs and demonstrate that key features of the endogenous siRNA pathway are relatively unchanged in animals.

genomics↗

bioRxiv2023

Activity-dependent Mitochondrial ROS Signaling Regulates Recruitment of Glutamate Receptors to Synapses

Our understanding of mitochondrial signaling in the nervous system has been limited by the technical challenge of analyzing mitochondrial function in vivo. In the transparent genetic model Caenorhabditis elegans, we were able to manipulate and measure mitochondrial signaling as well as neuronal activity in vivo. Using this approach, we provide evidence supporting a novel role for mitochondrial signaling in dendrites. Specifically, we show that dendritic mitochondria take up calcium (Ca2+) via the mitochondrial Ca2+ uniporter MCU-1 causing an upregulation of mitochondrial reactive oxygen species (mitoROS) production. We also observed that mitochondria are positioned in close proximity to synaptic clusters of GLR-1, the C. elegans ortholog of the AMPA subtype of glutamate receptors that mediate neuronal excitation. We show that synaptic recruitment of GLR-1 is downregulated by mitoROS signaling resulting from mitochondrial Ca2+ uptake via MCU-1. Thus, postsynaptic mitochondria provide a means of negative feedback that regulates excitatory synapse function which may be vital for neuronal homeostasis by preventing excitotoxicity and energy depletion.

neuroscience↗

bioRxiv2020

Reactive Oxygen Species Modulate Activity-Dependent AMPA Receptor Transport in C. elegans

The AMPA subtype of synaptic glutamate receptors (AMPARs) play an essential role in cognition. Their function, numbers and change at synapses during synaptic plasticity, is tightly regulated by neuronal activity. Although we know that long-distance transport of AMPARs is essential for this regulation, we dont understand the regulatory mechanisms of it. Neuronal transmission is a metabolically demanding process in which ATP consumption and production are tightly coupled and regulated. Aerobic ATP synthesis unavoidably produces reactive oxygen species (ROS), such as hydrogen peroxide, which are known modulators of calcium signaling. Although a role for calcium signaling in AMPAR transport has been described, there is little understanding of the mechanisms involved and no known link to physiological ROS signaling. Here, using real-time in vivo imaging of AMPAR transport in the intact C. elegans nervous system, we demonstrate that long-distance synaptic AMPAR transport is bidirectionally regulated by calcium influx and activation of calcium/calmodulin-dependent protein kinase II. Quantifying in vivo calcium dynamics revealed that modest, physiological increases in ROS decrease calcium transients in C. elegans glutamatergic neurons. By combining genetic and pharmacological manipulation of ROS levels and calcium influx, we reveal a mechanism in which physiological increases in ROS cause a decrease in synaptic AMPAR transport and delivery by modulating activity-dependent calcium signaling. Taken together, our results identify a novel role for oxidant signaling in the regulation of synaptic AMPAR transport and delivery, which in turn could be critical for coupling the metabolic demands of neuronal activity with excitatory neurotransmission. SIGNIFICANCE AND IMPACTSynaptic AMPARs are critical for excitatory synaptic transmission. The disruption of their synaptic localization and numbers is associated with numerous psychiatric, neurological, and neurodegenerative conditions. However, very little is known about the regulatory mechanisms controlling transport and delivery of AMPAR to synapses. Here, we describe a novel physiological signaling mechanism in which ROS, such as hydrogen peroxide, modulate AMPAR transport by modifying activity-dependent calcium influx. Our findings provide the first evidence in support of a mechanistic link between physiological ROS signaling, AMPAR transport, localization, and excitatory transmission. Of potential therapeutic importance, dysregulation of intracellular calcium and ROS signaling is implicated in the pathogenesis of several neurodegenerative disorders including Alzheimers and Parkinsons disease.

neuroscience↗