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Hockings, K. J.

Publications and source records attributed to Hockings, K. J..

2 recordsLinked to original sources

Automated detection of Bornean white-bearded gibbon (Hylobates albibarbis) vocalisations using an open-source framework for deep learning

Passive acoustic monitoring is a promising tool for monitoring at-risk populations of vocal species, yet extracting relevant information from large acoustic datasets can be time-consuming, creating a bottleneck at the point of analysis. To address this, we adapted an open-source framework for deep learning in bioacoustics to automatically detect Bornean white-bearded gibbon (Hylobates albibarbis) "great call" vocalisations in a long-term acoustic dataset from a rainforest location in Borneo. We describe the steps involved in developing this solution, including collecting audio recordings, developing training and testing datasets, training neural network models, and evaluating model performance. Our best model performed at a satisfactory level (F score = 0.87), identifying 98% of the highest-quality calls from 90 hours of manually-annotated audio recordings and greatly reduced analysis times when compared to a human observer. We found no significant difference in the temporal distribution of great call detections between the manual annotations and the models output. Future work should seek to apply our model to long-term acoustic datasets to understand spatiotemporal variations in H. albibarbis calling activity. Overall, we present a roadmap for applying deep learning to identify the vocalisations of species of interest which can be adapted for monitoring other endangered vocalising species.

ecology↗

Leprosy in wild chimpanzees

Humans are considered the main host for Mycobacterium leprae, the aetiologic agent of leprosy, but spill-over to other mammals such as nine-banded armadillos and red squirrels occurs. Although naturally acquired leprosy has also been described in captive nonhuman primates, the exact origins of infection remain unclear. Here, we report on leprosy-like lesions in two wild populations of western chimpanzees (Pan troglodytes verus) in the Cantanhez National Park, Guinea-Bissau, and the Tai National Park, Cote dIvoire, West Africa. Longitudinal monitoring of both populations revealed the progression of disease symptoms compatible with advanced leprosy. Screening of faecal and necropsy samples confirmed the presence of M. leprae as the causative agent at each site and phylogenomic comparisons with other strains from humans and other animals show that the chimpanzee strains belong to different and rare genotypes (4N/O and 2F). The independent evolutionary origin of M. leprae in two geographically distant populations of wild chimpanzees, with no prolonged direct contact with humans, suggests multiple introductions of M. leprae from an unknown animal or environmental source.

evolutionary biology↗