Hirota, R. | bioRxiv Science

bioRxiv2025

Comparative Genomic Analysis of Cyanobacteria as Amphibian Food Sources: Insights into High-Temperature Tolerance Potential

Hot-springs represent one of the most accessible yet extreme environments on the Earths surface. We isolated and characterized two novel cyanobacterial strains of the genus Leptolyngbya, L. sp. Akita and L. sp. Seranma from geothermal hot-springs in Japan. These strains showed distinct morphological features; L. sp. Akita exhibited linear filamentous structures and blue-green color when cultured under white light, whereas L. sp. Seranma exhibited loosely coiled structures and a brown color under the same conditions. Whole-genome sequencing and comprehensive genomic analyses of their genomes identified the acquisition of gene clusters related to metabolic processes, which may be associated with strain-specific phenotypes. In addition, intestinal metagenomic analysis of tadpoles (Buergeria buergeri and B. japonica) sympatrically living with these strains in the hot-springs suggested that the tadpoles utilized these Leptolyngbya as temporal or regular foods in high-temperature environments. These findings provide insights into the ecological significance of these cyanobacteria in extreme environments and their potential applications in biotechnology and the ecological conservation of primary consumers, including amphibians.

microbiology↗

bioRxiv2023

Distinct and interdependent functions of three RING proteins regulate recombination during mammalian meiosis

During meiosis, each pair of homologous chromosomes becomes connected by at least one crossover, as required for accurate segregation at the first division, and adjacent crossovers are widely separated thereby limiting total numbers. In coarsening models, crossover patterning results from nascent recombination sites competing to accrue a limiting pro-crossover RING-domain protein (COR) that diffuses between synapsed chromosomes. Here we delineate the localization dynamics of three mammalian CORs in mouse and determine their interdependencies. RNF212, HEI10 and a new member RNF212B show divergent spatiotemporal dynamics along synapsed chromosomes, including profound differences in spermatocytes and oocytes, that are not easily reconciled by elementary coarsening models. Contrasting mutant phenotypes and genetic requirements indicate that RNF212B, RNF212, and HEI10 play distinct but interdependent functions in regulating meiotic recombination and coordinating the events of meiotic prophase-I by integrating signals from DNA breaks, homolog synapsis, the cell-cycle, and incipient crossover sites. SIGNIFICANCEMeiosis produces haploid gametes by precisely halving the chromosome complement. Crossing over between homologous chromosomes (homologs) is essential for their accurate segregation and defects are associated with infertility, miscarriage, and congenital disease. Factors that ensure crossing over between each pair of homologs include mammalian RING-domain proteins RNF212, HEI10, and RNF212B, alleles of which are linked to infertility and heritable variation in crossover rate. This study focuses on understanding the functions and relationships between pro-crossover RING proteins (CORs) in mouse, providing important insights into their roles in regulating recombination, the DNA repair process that gives rise to crossovers. Notably, chromosomal localization dynamics of the three CORs are distinct and show striking sexual dimorphism with important implications for models of crossover control.

genetics↗