Biology subjects

Hiltbrunner, A.

Publications and source records attributed to Hiltbrunner, A..

8 recordsLinked to original sources

bioRxiv2026

Evolutionary co-option of the ancient protein AMBRA1 in plant photomorphogenesis

Photomorphogenesis, the light-driven developmental program of plants, is repressed in darkness by the CUL4-DDB1-COP1 ubiquitin ligase complex. In animals, AMBRA1 is a substrate receptor for the same CUL4-DDB1 machinery, regulating proteostasis, cell proliferation and autophagy, but its role in plants has remained unknown. Here we show that the moss Physcomitrium patens carries two light-regulated AMBRA1 genes, AMBRA1a and AMBRA1b, whose loss impairs vegetative growth and cell-fate transitions under light and prevents the elongation of gravitropic filaments in darkness, indicating that AMBRA1 is required to repress photomorphogenesis. AMBRA1 localizes to the nucleus under both long-day and dark conditions, and its loss causes widespread transcriptional reprogramming of developmental and metabolic pathways, including repression of photosynthesis-related genes in darkness. These findings identify AMBRA1 as a previously unrecognized nuclear regulator that links light availability to plant growth and as a key repressor of photomorphogenesis.

plant biology↗

bioRxiv2026

Functional specialization of the gibberellin receptor GIBBERELLIN-INSENSITIVE DWARF 1C in plant neighbour detection

Plants detect neighbours through a reduced red-to-far-red ratio (R:FR), triggering elongation growth that reduces crop yield. Although Gibberellin (GA) is required for the neighbour-proximity (NP) elongation response, bioactive GA levels do not increase sufficiently to account for elongation magnitude, suggesting GA sensitivity as an additional regulated variable. Here, we show that GID1C, one of three Arabidopsis GA receptors, is the primary GA receptor involved in NP-induced elongation. GID1C protein accumulates selectively in hypocotyls and root tips under low R:FR without an increase in bioactive GA. The gid1c mutant shows a reduced elongation response that exogenous GA treatment cannot rescue. Transcriptome profiling reveals that GID1C controls 86% of the NP-responsive transcriptome, including genes for cell growth, division, and transcriptional regulation. Hub analysis identifies ICE1 as a GID1C-repressed transcriptional brake. ICE1 transcript is suppressed under low R:FR in a GID1C-dependent manner, and a phosphorylation-resistant ICE1 allele blocks NP-induced elongation. Together, these findings establish GA perception as an additional regulatory layer in NP, with subfunctionalisation among GID1 paralogs shaping the response to neighbouring plants.

plant biology↗

bioRxiv2026

The TARGET OF RAPAMYCIN (TOR) kinase controls shade-mediated hypocotyl elongation responses in Arabidopsis

Plants perceive neighboring vegetation through an enrichment of far-red light (shade) in the environment. These changes in light quality trigger molecular and physiological responses aimed at outgrowing competitors, collectively known as the shade avoidance syndrome. In this study, we identify the TARGET OF RAPAMYCIN (TOR) complex 1 (TORC1), a major growth-regulating hub in eukaryotes, as a driver of shade-mediated growth responses in plants. Combining physiology, genetics, biochemistry, and proteomics, we show that TOR activity is rapidly enhanced upon shade perception and is required for proper shade responses, as TOR inhibition severely impairs shade-mediated elongation. Furthermore, we found that the control of shade-mediated elongation by TOR involves auxin-dependent mechanisms, requires efficient translation activity, and is closely linked to epidermal cell elongation capacity. Altogether, our work identifies TOR as a key integrator of light quality signals to control adaptive growth responses. Finally, we further highlight the conservation of shade-mediated TOR activation in tomato, with potential implications for engineering crop cultivars better suited to high-density planting.

Plant Biology↗

bioRxiv2025

A network of RS splicing regulatory proteins controls light-dependent splicing and seedling development

The light-induced change from skoto- to photomorphogenesis is a key switch in plant development that requires global transcriptome reprogramming. Earlier studies in Arabidopsis thaliana and other plant species have revealed the eminent role of alternative precursor mRNA splicing (AS), which allows fine-tuning the expression of numerous genes including light signaling and photosynthesis-related components in response to the ambient light conditions. Starting from the previous finding that AS changes induced by either light or metabolic signals are linked to phospho-signaling, we applied phospho-proteomics to identify proteins that undergo rapid changes in their phosphorylation status upon exposing etiolated seedlings to either light or sucrose. This approach revealed hyperphosphorylation of RS41, a member of the RS subfamily of serine/arginine-rich (SR) proteins. To study the function of the four RS genes RS31, RS31a, RS40, and RS41, a comprehensive set of single and higher order mutants was generated. A complete loss of RS function in the quadruple mutant caused sterility. Moreover, the important role of the RS proteins in seedling photomorphogenesis was demonstrated, with both redundant and specific functions in the regulation of hypocotyl elongation and cotyledon opening. We further identified the critical contribution of the RS proteins to light-dependent alternative splicing, being part of an intricate network of splicing regulatory components. Our study provides novel insight into the complex network of RNA-binding proteins that allow balancing light-responsive splicing and development in Arabidopsis seedlings.

plant biology↗

bioRxiv2023

Warm temperature and mild water stress cooperatively promote root elongation

Warm temperatures have a dramatic effect on plant development. In shoots, stems elongate, and leaves are raised in a developmental programme called thermomorphogenesis. This results in enhanced leaf cooling capacity1. Thermomorphogenesis is tightly intertwined with light signalling pathways. The level of integration is so high that it has been proposed that shoot temperature sensing may have evolved from the co-option of an existing light signalling pathway during the colonisation of land by plants2. Roots also undergo thermomorphogenesis, but the mechanism by which this occurs is less well understood. Main root elongation is enhanced at warm temperatures, and this response is independent of many of the light and temperature signalling components of the shoot3. Roots develop in darkness and so it is a reasonable assumption that root temperature signalling is not through modulation of light signalling. It was recently speculated that due to the close correlation between warm temperature and soil moisture content, root temperature signalling could feasibly be related to water availability signals2. In this study we tested the interaction between temperature and water availability signalling in plant roots. We found that these environmental factors co-operatively enhance main root elongation. This interaction effect was dependent on SUCROSE NON-FERMENTING RELATED KINASE 2.2 (SnRK2.2) and SnRK2.3 and the E3 ubiquitin ligase CONSTITUTIVELY PHOTOMORPHOGENIC 1 (COP1). We found that SnRK2.2 / 2.3 and COP1 have opposite effects on the stability of the transcription factor ELONGATED HYPOCOTYL 5 (HY5) in elongation zone hair cells. The stability of HY5 in these cell types generally corresponded to the degree of root elongation seen in each mutant background. Our study reveals several molecular components of root thermomorphogenesis and highlights the importance of an integrative approach to plant environmental signalling. Our results may have direct implications for agricultural land management, especially as global climates become more unpredictable.

plant biology↗

bioRxiv2023

Phytochrome higher order mutants reveal a complex set of light responses in the moss Physcomitrium patens

O_LIPhytochromes are photoreceptors enabling plants to respond to various light conditions. Independent gene duplication events resulted in small phytochrome gene families in mosses, ferns, and seed plants. This phytochrome diversity is hypothesised to be critical for sensing and adapting to different light conditions, but experimental evidence for this idea is lacking for mosses and ferns. C_LIO_LIThe model moss species Physcomitrium patens contains seven phytochromes grouped into three clades, PHY1/3, PHY2/4, and PHY5. Here, we used CRISPR/Cas9 generated single and higher order mutants to investigate their role in light-regulation of protonema and gametophore growth, protonema branching, and induction of gametophores. C_LIO_LIWe found both specific and partially overlapping roles for the three clades of moss phytochromes in regulating these responses in different light conditions, and we identified a mechanism for sensing simulated canopy shade different from the mechanism in seed plants. PHY1/3 clade phytochromes act as primary far-red light receptors, while PHY5 clade phytochromes are the primary red light receptors. PHY2/4 clade phytochromes have functions in both red and far-red light. C_LIO_LISimilar to seed plants, gene duplication events in the phytochrome lineage in mosses were followed by functional diversification into red and far-red light sensing phytochromes. C_LI

plant biology↗

bioRxiv2022

COR27/28 Regulate the Evening Transcriptional Activity of the RVE8 and LNK1/2 Circadian Complex

The timing of many molecular and physiological processes in plants occurs at a specific time of day. These daily rhythms are driven by the circadian clock, a master timekeeper that uses daylength and temperature to maintain rhythms of approximately 24 hours in various clock-regulated phenotypes. The circadian MYB-like transcription factor REVEILLE 8 (RVE8) interacts with its transcriptional coactivators NIGHT LIGHT INDUCIBLE AND CLOCK REGULATED 1 (LNK1) and LNK2 to promote the expression of evening-phased clock genes and cold tolerance factors. While genetic approaches have commonly been used to discover new connections within the clock and between other pathways, here we use affinity purification coupled with mass spectrometry to discover time-of-day-specific protein interactors of the RVE8-LNK1/2 complex. Among the interactors of RVE8/LNK1/LNK2 were COLD REGULATED GENE 27 (COR27) and COR28, which were coprecipitated in an evening-specific manner. In addition to COR27/28, we found an enrichment of temperature-related interactors that led us to establish a novel role for LNK1/2 in temperature entrainment of the clock. We established that RVE8, LNK1, and either COR27 or COR28 form a tripartite complex in yeast and that the effect of this interaction in planta serves to antagonize transcriptional activation of RVE8 target genes through mediating RVE8 protein degradation in the evening. Together, these results illustrate how a proteomic approach identified time-of-day-specific protein interactions and a novel RVE8-LNK-COR protein complex that implicates a new regulatory mechanism for circadian and temperature signaling pathways.

plant biology↗

bioRxiv2019

Phytochromes measure photoperiod in Brachypodium

Daylength is a key seasonal cue for animals and plants. In cereals, photoperiodic responses are a major adaptive trait, and alleles of clock genes such as PHOTOPERIOD DEPENDENT1 (PPD1) and EARLY FLOWERING3 (ELF3) have been selected for in breeding barley and wheat for more northern latitudes (Faure et al., 2012; Turner, Beales, Faure, Dunford, & Laurie, 2005). How monocot plants sense photoperiod and integrate this information into growth and development is not well understood. We show that in Brachypodium distachyon, phytochrome C (phyC) acts as a molecular timer, directly communicating information to the circadian clock protein ELF3. In this way, ELF3 levels integrate night length information. ELF3 is a central regulator of photoperiodism in Brachypodium, and elf3 mutants display a constitutive long day transcriptome. Conversely, conditions that result in higher levels of ELF3 suppress long day responses. We are able to show that these effects are direct, as ELF3 and phyC occur in a common complex, and they associate with the promoters of a number of conserved regulators of photoperiodism, including PPD1. Consistent with observations in barley, we are able to show that PPD1 overexpression accelerates flowering in SD and is necessary for rapid flowering in response to LD. These findings provide a conceptual framework for understanding observations in the photoperiodic responses of key crops, including wheat, barley and rice.

plant biology↗