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Biology subjects

Heyes, D. J.

Publications and source records attributed to Heyes, D. J..

3 recordsLinked to original sources

Triplet Quenching by Active Site Cysteine Residues Improves Photostability in Fatty Acid Photodecarboxylase

Enzyme photobiocatalysis uses light to drive high-energy transformations but is limited by the rarity of photoenzymes. Fatty acid photodecarboxylase (FAP), a recently discovered photoenzyme, enables fatty acid conversion to alkanes/alkenes via excitation of an FAD cofactor, though its poor photostability and photoinactivation has hindered industrial applications. Here, we combine protein engineering approaches with biocatalytic and biophysical techniques, as well as computational chemistry, to demonstrate that additional active site cysteine residues can suppress oxygen-mediated inactivation processes that are driven by the FAD triplet-excited state. We identify a number of positions close to the FAD for cysteine residues that lead to a significant enhancement in activity as a result of an increase in the number of catalytic turnovers and improved photostability. The additional cysteine residues quench the triplet excited state of the FAD cofactor via a proposed proton-coupled electron transfer mechanism, resulting in lower levels of harmful reactive oxygen species. Our study highlights promising routes to mitigate non-productive, photoinactivation pathways in FAP and informs the rational design of new flavin-based photoenzymes.

biochemistry↗

Integrated structural dynamics uncover new modes of B12 photoreceptor activation

Photoreceptor proteins initiate, regulate and control fundamental biological processes such as vision, photosynthesis and circadian rhythms1. A large photoreceptor subfamily uses vitamin B12 derivatives for light sensing2, contrasting with the well-established mode of action of these organometallic derivatives in thermally activated enzymatic reactions3. The molecular mechanism of B12 photoreception and how this differs to the thermal pathways remain unknown. Here we provide a detailed spatio-temporal description of photoactivation in the prototypical tetrameric B12 photoreceptor CarH4,5 from nanoseconds to seconds by using an integrative approach, combining time- and temperature-resolved structural and spectroscopic methods with quantum chemical calculations. High resolution structural snapshots of key intermediates illustrate how photocleavage of a Co-C bond triggers a pathway of structural changes that propagate throughout CarH from the B12 chromophore, via a previously unknown adduct, to finally cause tetramer dissociation. These unique intermediates, which differentiate CarH from thermally-activated B12 enzymes, steer the photoactivation pathway and act as the molecular bridge between photochemical and photobiological timescales. Our results offer a spatio-temporal understanding of CarH photoactivation and pave the way for designing and optimising B12-dependent photoreceptors for future optogenetic applications.

biophysics↗

Design and fabrication of recombinant reflectin-based Bragg reflectors: bio-design engineering and photoisomerism induced wavelength modulation

The remarkable camouflage capabilities of cephalopods have inspired many to develop dynamic optical materials which exploit certain design principles and/or material properties from cephalopod dermal cells. Here, the angle-dependent optical properties of various single-layer reflectin thin-films are characterized within the UV-Vis-NIR regions. Following this, the design and fabrication of the first bio-inspired reflectin-based Bragg reflector is described, which was found to conserve the optical properties of single layer films but exhibit a unique characteristic; reduced angle-dependent reflectivity. Finally, a novel method of controlling reflectin thin-film optical properties is introduced; visible light-induced photoisomerism, representing a new class of reflectin-based optical materials.

synthetic biology↗