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Hentschel, J.

Publications and source records attributed to Hentschel, J..

7 recordsLinked to original sources

Compartmentalized oxygen generation from hydrogen peroxide enables anaerobic oxidative phosphorylation and confers a fitness advantage

Hydrogen peroxide is a host-derived reactive oxygen species that invading bacteria must detoxify to overcome the host defence. It was previously proposed that cytoplasmic catalase converts this peroxide into molecular oxygen, allowing facultative anaerobes such as Escherichia coli and Salmonella to respire in oxygen-limited niches. Here, we experimentally test this mechanism by reconstituting a minimal system comprising bovine catalase and purified E. coli quinol oxidases in liposomes. We find that catalase-generated oxygen sustains quinol oxidation under anaerobic conditions, and the rapid consumption keeps the environment effectively oxygen-free. When F1FO ATP synthase is included into the proteoliposomes, the system generates a protonmotive force that drives ATP synthesis, with activity scaling with hydrogen peroxide concentration. Competition experiments at low peroxide concentrations demonstrate that compartmentalized oxygen production provides a decisive advantage, as liposomes lacking catalase are strongly outcompeted. All three terminal quinol oxidases of E. coli were tested and shown to support ATP synthesis in vitro, suggesting that bd-II involvement in vivo is likely due to regulation of gene expression rather than catalytic constraints. Together, our data show that intracellular oxygen generation from host-derived peroxide enables oxidative phosphorylation in globally anaerobic, electron-acceptor-limited environments such as the gut, thereby providing a mechanistic explanation for the observed fitness advantage.

biochemistry↗

Redox-Triggered Coupling Network Mediates Long-Range Energy Trans-duction in Respiratory Complex I

Complex I is a gigantic redox-driven proton pump that powers oxidative phosphorylation by a unique long-range (>200 [A]) proton-coupled electron transfer process. To elucidate the molecular principles underlying this intricate action-at-a-distance effect, we combine here multiscale quantum/classical (QM/MM) simulations with site-directed mutagenesis, proteoliposome experiments, and cryo-electron microscopy (cryo-EM). We find that quinol binding at a distinct site within a local membrane cavity, triggers a long-range protonation cascade over water-mediated proton wires along a conserved carboxylate pathway (E-channel). We identify a central mechanical switch point, comprising the conserved Tyr156H, the mutation of which impedes conformational changes along conserved loops, but not the proton transfer reaction itself. Using our integrative multi-disciplinary approach, we reveal central coupling sites along the redox-driven proton transport process mediating energy conversion in Complex I, and illustrate the power of theory-guided experiments.

biophysics↗

Who am I? Optimal Tissue for Germline Genetic Testing Post-Stem Cell Transplantation

With advancements in genetic diagnostics and genotype-based therapeutics, the demand for germline genetic testing in post-hematopoietic stem cell transplantation patients is increasing. Due to genetic chimerism, blood samples can no longer be used for germline testing after transplantation. This study aims to identify the most suitable tissue for germline analysis following stem cell transplantation by investigating alternative tissue sources. Buccal swab, eyebrow hair, and nail samples were analyzed for donor-derived DNA using next-generation sequencing and short tandem repeat analysis, with linear regression used for evaluation. Factors such as HLA match, transplantation type, sex, and time after transplantation were also evaluated for their effect on donor-derived DNA share. Buccal swab and nail samples exhibited 25% and 22% higher proportions of donor-derived DNA compared to eyebrow hair follicles, respectively. The median donor DNA share in eyebrow hair follicles was 1% for NGS and 3% for STR. Factors such as matched related donors, higher HLA match, different donor-recipient sex, and longer time post-transplantation correlated with lower donor DNA shares. Eyebrow hair follicles are a promising tissue for accurate germline genetic testing in post-SCT patients. Patient characteristics like donor relatedness, HLA match, sex match, and time after transplantation should be considered.

genetics↗

Drosophila Bchs overexpression recapitulates human WDFY3 neurodevelopmental phenotypes with implications for glial cell involvement in altered head circumference

The autophagy adaptor WDFY3 is linked to neurodevelopmental delay and altered brain size. Loss-of-function variants are associated with an increased brain size in both humans and mice. We thus, hypothesized that the microcephaly observed in some of the patients may be related to a gain-of-function of the WDFY3 gene product. While the role of WDFY3 loss-of-function has been studied extensively in neurons, little is known about the effects of WDFY3 overexpression in different neural cell types. We utilized a Drosophila melanogaster overexpression model to investigate the effect of the WDFY3 ortholog Bchs (blue cheese) on development, CNS size, and gene expression profiles. Glial and neuronal overexpression of Bchs impaired CNS development, locomotion and autophagy. Glial overexpression of Bchs also altered CNS size significantly. We identified 79 genes that were differentially expressed and overlapped in flies that overexpress Bchs in glial and neuronal cells, respectively. Additionally, upon neuronal Bchs overexpression differentially expressed genes clustered in gene ontology categories associated with autophagy and mitochondria. Our data indicate that WDFY3/Bchs overexpression in both neurons and glial cells results in impaired neural development, which corresponds to symptoms observed in WDFY3-related neurodevelopmental delay.

neuroscience↗

altAFplotter: a web app for reliable UPD detection in NGS diagnostics

The detection of uniparental disomies (the inheritance of both chromosome homologues from a single parent, UPDs) is not part of most standard or commercial NGS-pipelines in human genetics and thus a common gap in NGS diagnostics. To address this we developed a tool for UPD-detection based on panel, exome or whole genome sequencing data which is easy to use and publicly available. Detection of UPDs and delineation of different UPD types is achieved by combining two approaches: detection of runs of homozygosity and their extent per chromosome and investigation of variant inheritance and the ratios of uniparentally inherited variants per chromosome. Both metrics have been carefully tuned with a large set of positive and negative controls to allow reliable and sensitive detection of UPDs. We provide a web tool that can be easily accessed and used to enable geneticists to perform a sensitive UPD-detection analysis based on exome, panel and whole genome sequencing data (.vcf-files) on the fly.

bioinformatics↗

Multiplexed single-molecule analysis of human telomerase synthesizing DNA

Genomic stability in proliferating cells critically depends on telomere maintenance by telomerase reverse transcriptase. Here we developed a real-time single-molecule RNA sequencing approach that visualizes telomerase catalysis and structural dynamics at single-nucleotide resolution using FRET and zero-mode waveguides. The method permits direct detection of dynamic steps and structural states throughout the telomerase catalytic cycle and can be generalized to other nucleic acid polymerase systems.

biophysics↗

Scientific evaluation of negative exome sequencing followed by systematic scoring of candidate genes to decipher the genetics of neurodevelopmental disorders

BackgroundDeciphering the monogenetic causes of neurodevelopmental disorders (NDD) is an important milestone to offer personalized care. But the plausibility of reported candidate genes in exome studies often remains unclear, which slows down progress in the field.\n\nMethodsWe performed exome sequencing (ES) in 198 cases of NDD. Cases that remained unresolved (n=135) were re-investigated in a research setting. We established a candidate scoring system (CaSc) based on 12 different parameters reflecting variant and gene attributes as well as current literature to rank and prioritize candidate genes.\n\nResultsIn this cohort, we identified 158 candidate variants in 148 genes with CaSc ranging from 2 to 11.7. Only considering the top 15% of candidates, 14 genes were already published or funneled into promising validation studies.\n\nConclusionsWe promote that in an approach of case by case re-evaluation of primarily negative ES, systematic and standardized scoring of candidate genes can and should be applied. This simple framework enables better comparison, prioritization, and communication of candidate genes within the scientific community. This would represent an enormous benefit if applied to the tens of thousands of negative ES performed in routine diagnostics worldwide and speed up deciphering the monogenetic causes of NDD.

genetics↗