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Biology subjects

Heidari, Z.

Publications and source records attributed to Heidari, Z..

3 recordsLinked to original sources

The obesity associated BDNF intron-3 cis-regulatory element, BE5.1, modulates the effects of early-life stress on weight gain, anxiety and gene expression in a sex dependent manner.

Early-life stress (ELS) has been associated with increases in obesity and anxiety and affects males and females in different ways. Animal and human studies indicate that ELS has maladaptive effects on brain development due, in part, to disruptions in the expression of genes that include brain-derived neurotrophic factor (BDNF). Our previous studies identified a cis-regulatory element (CRE, BE5.1) within BDNF intron-3 that harbours a SNP associated with obesity and anxiety. We used maternal separation (MS) to examine the role of BE5.1 in controlling resilience to the maladaptive effects of ELS. At 9-11 weeks, BE5.1KO mice experience a delay in weight gain compared to WT mice, a phenotype partly reversed by MS in BE5.1KO females. The effects of either MS or BE5.1KO decreased anxiety-like behaviour in males whereas MS had little effect in females who displayed increased anxiety-like behaviour in animals lacking BE5.1. We also found that social behaviours are influenced by BE5.1 deletion in females but are more influenced by MS in males. Furthermore, deletion of BE5.1 and MS together significantly decreased marble burying behaviour in male mice, an effect negated by diazepam. RNA-seq analyses suggest that, in hypothalamus, BE5.1 is required to stabilize or down-regulate the transcription of 26 key genes, with diverse neuroregulatory roles, in response to MS as these 26 genes are strongly upregulated in the absence of BE5.1. We also provide evidence that three of these genes; Prkcg, Foxg1 and Mef2c, modulate BE5.1 activity in an allele-specific manner. Taken together, these results suggest that the BE5.1CRE acts as a buffer element that protects against the maladaptive effects of MS on gene expression and later life behaviours in a sex-dependent manner.

molecular biology↗

Analysis of genetic diversity and association of seed and mucilage yields with inter simple sequence repeats (ISSR) polymorphism in a collection of Plantgao species

Analysis of genetic diversity in medicinal plants assists germplasm conservation and selection for use in breeding schemes. The aims of the present study were to assess genetic diversity and differentiation of several Plantago species using Inter Simple Sequence Repeats (ISSR) markers and identify marker-trait associations (MTAs). Thirty-one Plantago accessions belonging to eight species with various mating system and chromosome number were collected from geographical regions of Iran environments. Polymorphism in the DNA of Plantago accessions were analyzed using polymerase chain reaction (PCR) of 25 ISSR primers. The data for number of polymorphic bands were analyzed on the basis of several genetic diversity parameters. The results of gel analysis indicated that the ISSR primers amplified 5 to 21 polymorphic bands with 100 to 3000 bp size. The mean polymorphism was 83.83% and five primers showed 100% polymorphism among Plantago accessions. The Polymorphism Information Content (PIC) for ISSR as a dominant marker ranged from 0.1103 to 0.3829 with the mean 0.2727 in the species tested. Accessions in P. amplexicaulis and P. pysillum species represented the highest Neis and Shannons genetic diversity whilst the lowest obtained for P. lagopus. Analysis of phylogenetic network generated by the Neighbor-Net Algorithm showed moderate split of the eight species tested and the network depicted moderate conflict. The principal coordinate analysis (PCoA) results showed lower conflict in separation of accessions of the eight species. Fifty-six significant MTAs were detected for the traits tested in Plantago accessions, of which six were shared between three seed and mucilage traits and 24 were common between two traits. The coefficient of determination (R2) for the identified MTAs varied between 32 and 73%. In conclusion, the results of genetic diversity analysis suggested that ISSR marker could efficiently differentiate Plantago species and the information of genetic diversity might assist Plantago improvement and conservation.

plant biology↗

A structural mechanism for directing inverse agonism of PPARγ

Small chemical modifications can have significant effects on ligand efficacy and receptor activity, but the underlying structural mechanisms can be difficult to predict from static crystal structures alone. Here we show how a simple phenyl-to-pyridyl substitution between two common covalent orthosteric ligands targeting peroxisome proliferator-activated receptor gamma (PPAR{gamma}) converts a transcriptionally neutral antagonist (GW9662) into an inverse agonist (T0070907). X-ray crystallography, molecular dynamics simulations, and mutagenesis coupled to activity assays reveal a water-mediated hydrogen bond network linking the T0070907 pyridyl group to Arg288 that is essential for inverse agonism. NMR spectroscopy reveals that PPAR{gamma} exchanges between two long-lived conformations when bound to T0070907 but not GW9662, including a conformation that prepopulates a corepressor-bound state, priming PPAR{gamma} for high affinity corepressor binding. Our findings demonstrate that ligand engagement of Arg288 may provide new routes for developing PPAR{gamma} inverse agonist.

biochemistry↗