Biology subjects

Hebda-Bauer, E.

Publications and source records attributed to Hebda-Bauer, E..

3 recordsLinked to original sources

bioRxiv2024

Resource: A Curated Database of Brain-Related Functional Gene Sets (Brain.GMT)

O_LITranscriptional profiling has become a common tool for investigating the nervous system. During analysis, differential expression results are often compared to functional ontology databases, which contain curated gene sets representing well-studied pathways. This dependence can cause neuroscience studies to be interpreted in terms of functional pathways documented in better studied tissues (e.g., liver) and topics (e.g., cancer), and systematically emphasizes well-studied genes, leaving other findings in the obscurity of the brain "ignorome". C_LIO_LITo address this issue, we compiled a curated database of 918 gene sets related to nervous system function, tissue, and cell types ("Brain.GMT") that can be used within common analysis pipelines (GSEA, limma, edgeR) to interpret results from three species (rat, mouse, human). Brain.GMT includes brain-related gene sets curated from the Molecular Signatures Database (MSigDB) and extracted from public databases (GeneWeaver, Gemma, DropViz, BrainInABlender, HippoSeq) and published studies containing differential expression results. C_LIO_LIAlthough Brain.GMT is still undergoing development and currently only represents a fraction of available brain gene sets, "brain ignorome" genes are already better represented than in traditional Gene Ontology databases. Moreover, Brain.GMT substantially improves the quantity and quality of gene sets identified as enriched with differential expression in neuroscience studies, enhancing interpretation. C_LI Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=101 SRC="FIGDIR/small/588301v1_ufig1.gif" ALT="Figure 1"> View larger version (25K): org.highwire.dtl.DTLVardef@d8a5beorg.highwire.dtl.DTLVardef@1697a1aorg.highwire.dtl.DTLVardef@1cf4cf8org.highwire.dtl.DTLVardef@c634dd_HPS_FORMAT_FIGEXP M_FIG C_FIG Specifications table O_TBL View this table: org.highwire.dtl.DTLVardef@b8ac07org.highwire.dtl.DTLVardef@2628f8org.highwire.dtl.DTLVardef@14bb803org.highwire.dtl.DTLVardef@1ddbfborg.highwire.dtl.DTLVardef@5567e8_HPS_FORMAT_FIGEXP M_TBL C_TBL

neuroscience↗

bioRxiv2022

Cocaine during adolescence differentially impacts psychomotor sensitization and epigenetic profiles in adult male rats with divergent affective phenotypes

While early life drug use reliably predicts addiction liability in adulthood, the molecular mechanism by which this occurs, and the degree genetic predisposition is involved is not known. We used a unique genetic rat model of temperament to determine the impact of adolescent cocaine experience on adult psychomotor sensitization and epigenetic profiles in the striatum. Relative to adult bred low-responder (bLR) rats, bred high-responders (bHR) are more sensitive to the psychomotor-activating effects of cocaine and reinstate drug-seeking behavior more readily following prolonged cocaine exposure and a period of abstinence. We found that a 7-day sensitizing cocaine regimen (15 mg/kg/day) during either adolescence or adulthood produced psychomotor sensitization in bHRs only, while a dual cocaine exposure prevents further sensitization, suggesting limits on neuroplasticity. By contrast, adolescent cocaine in bLRs shifted their resilient phenotype, rendering them more responsive to cocaine in adulthood when initially challenged with cocaine We then assessed two functionally opposite epigenetic chromatin modifications, previously implicated in addiction liability, permissive acetylation (ac) and repressive tri-methylation (me3), on histone 3 lysine 9 (H3K9) in four sub-regions of the striatum. In bHRs, decreased repressive histone, H3K9me3, and increased permissive histone, acH3K9, in nucleus accumbens core associated with cocaine sensitization. However, there were limits on these epigenetic changes that paralleled the behavioral limits on further sensitization. In bLRs, the combination of cocaine exposure in adolescence and adulthood, which lead to an increase in their responsiveness to a cocaine challenge, also increased acH3K9 expression in the core. Thus, adolescent cocaine experience interacts with genetic background to elicit different behavioral profiles relevant to addiction in adulthood, with concurrent modifications in the epigenetic histone profiles in the nucleus accumbens that associate with cocaine sensitization and with metaplasticity. SIGNIFICANCE STATEMENTAdolescence is a critical period when brain developmental trajectories continue to be established and when most illicit drug use is initiated in humans. Notably, however, only a minority of adolescent drug users go on to develop substance use disorders in adulthood. We hypothesize that individual differences in genetic vulnerability, temperamental phenotype and adolescent drug history intersect to modify life-long drug abuse liability, with epigenetic modification playing an important role in this interplay. We tested this hypothesis in a genetic animal model of temperament. Our results show that adolescent cocaine experience induces psychomotor sensitization in vulnerable individuals, and that a dual exposure to cocaine (both in adolescence and adulthood) limits further sensitization in these individuals, an example of metaplasticity. By contrast, individuals who are typically resilient become more responsive to cocaine when exposed to this drug during adolescence and are then re-exposed as adults. Differences in behavioral response to cocaine were associated with unique epigenetic changes in the nucleus accumbens core. These findings shed light on the interplay of genes, environment and adolescent exposure to drugs in susceptibility to substance use disorders.

neuroscience↗

bioRxiv2021

Differences in microglia morphological profiles reflect divergent emotional temperaments: Insights from a selective breeding model

Microglia are known to play critical roles in healthy brain development and function, as well as the neuropathology underlying a range of brain diseases. Despite the growing evidence for a role for microglia in affective regulation and mood disorders, relatively little is known regarding how variation in microglia status relates to individual differences in emotionality. Using a selective breeding model based on locomotor response to novelty, we have generated rat lines with unique temperamental phenotypes that reflect broad emotional traits: low responder rats (bLRs) are novelty-averse and model a passive coping style, whereas high responder rats (bHRs) are highly exploratory and model an active coping style. To identify a possible functional role of microglia in these phenotypes, we administered minocycline, an antibiotic with potent microglia inhibiting properties. We found changes in emotional and social behaviors in bLRs, with no discernable effects in bHRs. Using detailed anatomical analyses, we went on to explore the nature of baseline differences in hippocampal microglia populations associated with the divergent temperaments. Interestingly, we found that although bHRs and bLRs had comparable total numbers of hippocampal microglia, selective breeding was associated with a shift in the morphological features of these cells. Specifically, microglia from bLRs were characterized by a hyper-ramified morphology, with longer processes and more complicated branching patterns than microglia from bHRs. This morphology is thought to reflect an early stage of microglia activation and suggests that microglia from bLRs may be in a reactive state even when animals are not overtly stressed or challenged. Taken together, our results provide novel evidence linking variation in inborn temperament with differences in the baseline morphological status of microglia cells and highlight the importance of considering the role of microglia not only in acute responses to stress but also in shaping enduring characteristics of emotionality.

neuroscience↗