Biology subjects

Harrison, J. S.

Publications and source records attributed to Harrison, J. S..

8 recordsLinked to original sources

bioRxiv2026

Viscoelastic liquid lassos extend the defensive reach of termite soldiers

Small animals face a severe size asymmetry when defending themselves against larger predators. Soldiers of Nasutitermes termites overcome this constraint by ejecting tens of nanoliters of secretion through a cephalic nozzle, the nasus. High-speed imaging in the field, rheometry, micro-CT, flow simulation, behavioral assays, and scaled experiments reveal a multistage defense. A near-linear nasus and shear-thinning secretion support rapid ejection. Lateral head oscillation at 5-30 Hz couples with rope-coiling instability to distribute the filament as loops and meanders, a ``liquid lasso,'' reaching up to three body lengths. After deposition, the apparent extensional viscosity increases 8- 80-fold, delaying breakup as the secretion cures into a persistent adhesive. The lasso coats the sensory and grooming structures of predatory ants, and tethers them to the substrate. Synthetic experiments show that nozzle geometry, orientation, height, and oscillatory motion jointly control ejection and coverage, providing design principles for deploying small volumes of time-evolving viscoelastic materials.

biophysics↗

bioRxiv2026

Takeoff dynamics are stereotyped across jumping spiders

Jumping is a challenging locomotive mode, requiring rapid force generation and precise coordination of multiple limbs. Many animals meet this challenge using elastic mechanisms that store and rapidly release energy. Jumping spiders (Salticidae), however, rely on a semi-hydraulic system that constrains how their legs can generate propulsion. Much about how these spiders reliably generate jumps within these mechanical constraints remains unknown. Here, we analyze 46 individuals spanning 14 genera and significant morphological diversity and show that this physically constrained system is coupled to a remarkably stereotyped coordination strategy. Whole-body kinematics and novel graph-based analyses of inter-limb coordination reveal a stereotyped two-stage takeoff sequence: a "swing" driven by extension of the fourth legs, followed by a rapid "fling" by the third legs that generates propulsion for takeoff. We further demonstrate that this pattern is preserved beyond Amazonian species, persisting in salticids from North America and Australia. Our results suggest that physical and biomechanical constraints may canalize locomotor evolution toward a common dynamical solution.

animal behavior and cognition↗

bioRxiv2025

Rhagovelia uses interfacial run-and-tumble locomotionto improve prey capture in flowing environments

Rhagovelia oriander is a freshwater water strider native to the rivers and streams of North and South America, known for its distinctive skating movement on the waters surface. This movement resembles the correlated random-walk pattern seen in microorganisms such as Escherichia coli. Previous studies have primarily focused on limb adaptations and biomechanics, leaving the ecological significance inadequately addressed. We combine field observations with controlled laboratory experiments using a flow mill to investigate the dynamics of R. oriander under typical flow conditions. Our findings indicate that this insect exhibits a two-dimensional run-and-tumble motion, often incorporating lateral tumbles following straight runs (run distance: 30.7 {+/-} 9.3 mm). We find that this behavior is resilient to changes in flow speed. In-silico simulations of particle interception demonstrated that this locomotion method enhances encounter rates compared to linear movement, particularly when the simulated food particle is following a rapid flow field. Our results document run-and-tumble locomotion in a millimeter-scale organism, showcasing a unique example of convergent behavior across diverse taxonomic groups and providing valuable insights into locomotion ecology while serving as a source of inspiration for bioinspired robotics and environmental exploration algorithms.

biophysics↗

bioRxiv2025

Hexapods shift to increasingly stable gaits when climbing on inclined substrates

When terrestrial organisms locomote in natural settings, they must navigate complex surfaces that vary in incline angles and substrate roughness. Variable surface structures are common in arboreal environments and can be challenging to traverse. This study examines the walking gait of katydids (Tettigoniidae) as they traverse a custom-built platform with varying incline angles (30{degrees}, 45{degrees}, 60{degrees}, 75{degrees}, 90{degrees}) and substrate roughness (40, 120, and 320 grit sandpaper). Our results show that katydids walk more slowly as the incline angle increases and as katydid mass increases, with a decrease of around 0.3 BL/s for every 1{degrees} increase in incline. At steeper inclines and larger sizes, katydids are also less likely to use an alternating tripod gait, opting instead to maintain more limbs in contact with the substrate during walking. Katydids also increased average duty factor when climbing steeper inclines and with increasing body mass. However, substrate roughness did not affect walking speed or gait preference in our trials. These findings provide insights into how environmental factors influence locomotor strategies in katydids and enhance our understanding of effective locomotor strategies in hexapods.

animal behavior and cognition↗

bioRxiv2024

Design of linked-domain protein inhibitors of UBE2D as tools to study cellular ubiquitination

Ubiquitin (Ub) is a post-translational modification that largely controls proteostasis through mechanisms spanning transcription, translation, and notably, protein degradation. Ub conjugation occurs through a hierarchical cascade of three enzyme classes (E1, E2, and E3s) involving >1000 proteins that regulate the ubiquitination of proteins. The E2 Ub-conjugating enzymes are the midpoint, yet their cellular roles remain under-characterized, partly due to a lack of inhibitors. For example, the cellular roles of the promiscuous E2 UBE2D/UBCH5 are not well described. Here, we develop a highly selective, multivalent, engineered protein inhibitor for the UBE2D family that simultaneously targets the RING- and backside-binding sites. In HeLa cells, these inhibitors phenocopy knockdown of UBE2D by reducing the IC50 to cisplatin and whole-cell proteomics reveal an increased abundance of [~]20% of the identified proteins, consistent with reduced Ub degradation and proteotoxic stress. These precision tools will enable new studies probing UBE2Ds central role in proteome management.

biochemistry↗

bioRxiv2021

Co-evolutionary analysis suggests a role for TLR9 in papillomavirus restriction

A.Upon infection, DNA viruses can be sensed by pattern recognition receptors (PRRs) leading to the activation of type I and III interferons, aimed at blocking infection. Therefore, viruses must inhibit these signaling pathways, avoid being detected, or both. Papillomavirus virions are trafficked from early endosomes to the Golgi apparatus and wait for the onset of mitosis to complete nuclear entry. This unique subcellular trafficking strategy avoids detection by cytoplasmic PRRs, a property that may contribute to establishment of infection. However, as the capsid uncoats within acidic endosomal compartments, the viral DNA may be exposed to detection by toll-like receptor (TLR) 9. In this study we characterize two new papillomaviruses from bats and use molecular archeology to demonstrate that their genomes altered their nucleotide composition to avoid detection by TLR9, providing evidence that TLR9 acts as a PRR during papillomavirus infection. Furthermore, we demonstrate that TLR9, like other components of the innate immune system, is under evolutionary selection in bats, providing the first direct evidence for co-evolution between papillomaviruses and their hosts.

microbiology↗

bioRxiv2021

Mechanically Transduced Immunosorbent Assay To Measure Protein-Protein Interactions

Measuring protein-protein interaction (PPI) affinities is fundamental to biochemistry. Yet, conventional methods rely upon the law of mass action and cannot measure many PPIs due to a scarcity of reagents and limitations in the measurable affinity ranges. Here we present a novel technique that leverages the fundamental concept of friction to produce a mechanical signal that indicates binding. The mechanically transduced immunosorbent (METRIS) assay utilizes rolling magnetic probes to measure PPI interaction affinities. METRIS measures the translational displacement of protein-coated particles on a protein-functionalized substrate. The translational displacement scales with the effective friction induced by a PPI, thus producing a mechanical signal when a binding event occurs. The METRIS assay uses as little as 20 pmols of reagents to measure a wide range of affinities while exhibiting a high resolution and sensitivity. Here we use METRIS to measure several PPIs that were previously inaccessible using traditional methods, providing new insights into epigenetic recognition.

biochemistry↗

bioRxiv2020

In silico APC/C substrate discovery reveals cell cycle degradation of chromatin regulators including UHRF1

The Anaphase-Promoting Complex/Cyclosome (APC/C) is an E3 ubiquitin ligase and critical regulator of cell cycle progression. Despite its vital role, it has remained challenging to globally map APC/C substrates. By combining orthogonal features of known substrates, we predicted APC/C substrates in silico. This analysis identified many known substrates and suggested numerous candidates. Unexpectedly, chromatin regulatory proteins are enriched among putative substrates and we show that several chromatin proteins bind APC/C, oscillate during the cell cycle and are degraded following APC/C activation, consistent with being direct APC/C substrates. Additional analysis revealed detailed mechanisms of ubiquitylation for UHRF1, a key chromatin regulator involved in histone ubiquitylation and DNA methylation maintenance. Disrupting UHRF1 degradation at mitotic exit accelerates G1-phase cell cycle progression and perturbs global DNA methylation patterning in the genome. We conclude that APC/C coordinates crosstalk between cell cycle and chromatin regulatory proteins. This has potential consequences in normal cell physiology, where the chromatin environment changes depending on proliferative state, as well as in disease.

cell biology↗