bioRxiv Science⌕ Search

Biology subjects

Harmanec, A.

Publications and source records attributed to Harmanec, A..

2 recordsLinked to original sources

In vivo imaging uncovers an abundant but rarely active pool of plant ARP2/3 complexes associated with exocyst complex subunit

The ARP2/3 complex generates branched actin networks that regulate membrane dynamics across eukaryotes. In plants, ARP2/3 is activated primarily by the WAVE/SCAR complex and is essential for cell morphogenesis, yet its spatiotemporal behavior in living cells remains poorly understood. Using high-resolution live-cell microscopy, we found that, in addition to their previously reported stable accumulation at three-way cell junctions and peroxisomes, WAVE/SCAR and ARP2/3 subunits also form abundant, highly dynamic, short-lived assemblies in the cortical cytoplasm, with lifetimes of only a few seconds. Genetic and colocalization analyses further revealed that only a minority of observed complexes are fully assembled and active, indicating that plant cells maintain a large pool of partially assembled or inactive ARP2/3 structures. Our data indicate that microtubules influence the abundance of cortical assemblies, whereas actin primarily affects their dynamics. Importantly, our analysis demonstrated a spatial and functional association between dynamic ARP2/3 foci and exocytotic events at the plasma membrane. Together, our findings suggest that the cytoplasm of plant epidermal cells contains a large reservoir of ARP2/3 complexes whose localized activation is tightly regulated and associated with membrane trafficking.

plant biology↗

Shape2Fate: a morphology-aware deep learning framework for tracking endocytic and exocytic carriers at nanoscale.

Plasma membrane homeostasis requires balanced exocytosis and endocytosis, yet their coordination at the single-event level in non-neuronal cells is unresolved. We present Shape2Fate, a morphology-aware deep-learning pipeline that detects, tracks, and classifies individual exocytic and endocytic carriers in live-cell total internal reflection fluorescence structured illumination microscopy (TIRF-SIM) movies at [~]100 nm resolution. Trained on synthetic data and exploiting carrier shape evolution rather than fluorescence intensity, Shape2Fate achieves expert-level tracking and outcome classification across diverse cell types, imaging conditions, and microscope platforms. Applying Shape2Fate to constitutive secretion and insulin-stimulated GLUT4 exocytosis in adipocytes, we uncover two opposing exo-endocytic coupling architectures: exocytic fusion locally nucleates de novo clathrin-coated pits, whereas GLUT4 vesicles target pre-existing pits for rapid cargo capture. These findings establish that the spatial rules governing exo-endocytic coordination are not universal but are pathway-specific. Shape2Fate is openly available, enabling direct event-level mechanistic dissection of exo-endocytic coordination across pathways in living cells.

cell biology↗