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Harada, Y.

Publications and source records attributed to Harada, Y..

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Homologous expression and characterization of gassericin T and gassericin S, a novel class IIb bacteriocin produced by Lactobacillus gasseri LA327

Lactobacillus gasseri LA327 isolated from the large intestine tissue in humans is a bacteriocinogenic strain and is predicted to produce two kinds of class IIb bacteriocins, i.e. gassericin T (GT) and acidocin LF221A (Acd LF221A). In this study, DNA sequencing of the genes for GT and Acd LF221A on Lb. gasseri LA327 revealed that the amino acid sequences for GT completely corresponded with those of gat except for GatK (histidine kinase). However, those for the Acd LF221A had analogues which differed in at least one amino acid residue to be a putative class IIb bacteriocin designated as gassericin S (GS). By deletion test of GT structural genes (gatAX), the LA327 strain retained the bacteriocin activity, and the LA327 mutant strain lacking the ABC-type transporter gene (gatT) completely lost the bacteriocin activity. This indicates that LA327 strain is a GS producer, and GS production is performed via gat with the inclusion of gatT. Homologous expression using deletion mutants for GS and GT containing each single peptide elucidated that GS (GasAX) and GT (GatAX) showed synergistic activity as class IIb bacteriocins, respectively, and no synergistic activity was observed between each peptide of GS and GT. The molecular mass of GS was estimated to be theoretical ca. 5,400 Da by in situ activity assay after SDS-PAGE, clarifying that GS was actually expressed as an active class IIb bacteriocin. Furthermore, stability of GS expressed against pH, heat and protease was determined.\n\nImportanceWe determined the complete DNA sequence for GS, a novel class IIb bacteriocin of Lb. gasseri, and succeeded to express GS as active bacteriocins. Our results clarified the interaction of each class IIb component peptide for GT in addition to GS via construction of homologous mutants which were not dependent on the purification. These data may demonstrate the characteristics of class IIb bacteriocins for Lb. gasseri.

microbiology

Deciphering The Developmental Program In The Ascidian Ciona intestinalis Just Prior To Gastrulation

The embryo of the ascidian Ciona intestinalis displays striking anatomical simplicity, with an invariant cleavage pattern during development. It has a monoploid genome like the model organisms Drosophila melanogaster and Caenorhabditis elegans, whereas vertebrates generally exhibit tetraploidy. In this study, I took advantage of these characteristics to investigate the development of the organism as one reverse-engineers an industrial product. First, the spatial expression of 211 genes was digitalized. Some genes showed variable expression patterns, which might reflect multiple snapshots of a single temporally dynamic expression at different times. Several developmental territories of the embryo were considered to be very similar to each other; however, this digitalization of gene expression patterns showed that differences occurred between individual blastomeres even within a single developmental territory. Furthermore, Ciona Brachyury (Ci-Bra) was expressed in those blastomeres in which both Fox (forkhead-box) A-a and Zic (zinc-finger) L were expressed, these proteins being upstream regulators of Ci-Bra. The approach described enables the developmental program to be studied in silico.\n\nSUMMARY STATEMENTA detailed expansion of our knowledge on an animal developmental program by using already published gene expression data with the aid of computers

developmental biology