Biology subjects

Hansen, B. B.

Publications and source records attributed to Hansen, B. B..

7 recordsLinked to original sources

bioRxiv2024

Rapid loss of genetic variation and increased inbreeding in small and isolated populations of Norwegian wild reindeer

Wildlife responses to habitat loss and fragmentation are a central concern in the management and conservation of biodiversity. Small and isolated populations are vulnerable, both due to demographic and genetic mechanisms, which are often linked. Thus, understanding how (changes in) genetic diversity, effective population sizes, and levels of inbreeding relate to population size and degree of isolation is key for developing effective conservation strategies. High-density Single Nucleotide Polymorphism (SNP) arrays represent an increasingly cost-efficient tool to achieve the data needed for such analysis. Here, we present the development of a novel 625k SNP array for reindeer Rangifer tarandus and apply this array to assess conservation genetic issues across thirteen Norwegian wild reindeer populations of varying size, isolation, and genetic origin (i.e., semi-domesticated reindeer origin or a mix of wild reindeer and semi-domesticated reindeer origins). Many of these populations are currently completely isolated, with no gene flow from other populations. We genotyped n = 510 individuals sampled by hunters and found that variation in population size across the populations largely predicted their (recent loss of) genetic variation (observed heterozygosity, Ho), as well as effective population size (Ne) and (change in) level of recent inbreeding. For the smallest and most isolated populations, with total population sizes of <50-100 individuals and a high and increasing level of recent inbreeding, estimated loss of genetic variation was as high as 3-10% over the time span of a generation or less, and estimated Ne was as low as six individuals. With the current level of isolation and associated lack of gene flow, and considering their already low genetic diversity, these populations are hardly viable - neither demographically nor genetically - in the long term. These results have direct relevance for the management of Norwegian wild reindeer, recently red-listed as Near Threatened. Yet, these genetic challenges, characterizing many of the small wild reindeer populations in Norway, have been largely ignored by management thus far. Mitigation efforts such as reducing barriers would introduce substantial conservation dilemma due to the aim of avoiding further spread of chronic wasting disease (CWD), as well as potential further domestic introgression into populations with genetically wild reindeer (or mixed) origin. Nevertheless, our cost-efficient and high-density SNP array especially designed for reindeer and caribou offers a powerful genetic tool to include in future monitoring, providing important contributions to management and conservation decisions.

genetics↗

bioRxiv2023

A paleogenomic investigation of overharvest implications in an endemic wild reindeer subspecies

Overharvest can severely reduce the abundance and distribution of a species and thereby impact its genetic diversity and threaten its future viability. Overharvest remains an ongoing issue for Arctic mammals, which due to climate change now also confront one of the fastest changing environments on Earth. The high-Arctic Svalbard reindeer (Rangifer tarandus platyrhynchus), endemic to Svalbard, experienced a harvest-induced demographic bottleneck that occurred during the 17-20th century. Here we investigate changes in genetic diversity, population structure and gene-specific differentiation during and after this overharvesting event. Using whole-genome shotgun sequencing, we generated the first ancient nuclear (n = 11) and mitochondrial (n = 18) genomes from Svalbard reindeer (up to 4000 BP) and integrated these data with a large collection of modern genome sequences (n = 90), to infer temporal changes. We show that hunting resulted in major genetic changes and restructuring in reindeer populations. Near-extirpation and 400 years of genetic drift have altered the allele frequencies of important genes contributing to diverse biological functions. Median heterozygosity was reduced by 23%, while the mitochondrial genetic diversity was reduced only to a limited extent, likely due to low pre-harvest diversity and a complex post-harvest recolonization process. Such genomic erosion and genetic isolation of populations due to past anthropogenic disturbance will likely play a major role in metapopulation dynamics (i.e., extirpation, recolonization) under further climate change. Our results from a high-arctic case study therefore emphasize the need to understand the long- term interplay of past, current, and future stressors in wildlife conservation.

genomics↗

bioRxiv2023

How do life history traits influence the environment's effect on population synchrony? Insights from European birds and insects

Populations closer together in space are more likely to experience shared environmental fluctuations. This correlation in experienced environmental conditions is the main driver of spatial population synchrony, defined as the tendency for geographically separate populations of the same species to exhibit parallel fluctuations in abundance over time. Morans theorem states that spatially distinct populations are expected to show the same synchrony in their population dynamics as the synchrony in their environment. However, this is rarely the case in the wild, and the population synchrony of different species inhabiting the same area is rarely similar. These species-specific differences in how the environment synchronizes populations can be due to life history traits that make some species more susceptible to environmental stochasticity, such as reduced mobility or faster pace of life. In this study, we compiled long-term annual abundance datasets on European birds and insects (Lepidoptera sp. and Bombus sp.) to identify how environmental synchrony (i.e., positively spatially correlated fluctuations in the environment, also called the Moran effect) affects species population synchrony. As expected, the environment synchronized populations of both birds and insects. Populations experiencing correlated fluctuations in precipitation or temperature had higher synchrony in annual population growth rates. Birds were more strongly synchronized by temperature, while precipitation was a stronger driver of synchrony in insects. In birds, species with short generation times had a stronger synchronizing effect of the environment compared to species with long generation times. Moreover, in birds the effects of synchrony in the environment also depended on movement propensity, with a positive impact for resident and short-distance migration species. In insects, annual population synchrony was affected by species movement propensity and dietary niche breadth, but these traits did not modify the effects of environmental synchrony. Our study provides empirical support for the prediction that spatial correlation in population dynamics is more influenced by environmental stochasticity for life histories with lower mobility and faster pace of life, but only in birds. By quantifying spatial population synchrony across different levels of environmental synchrony and life history traits, our study improves the understanding of the Moran effect as well as factors that drive population persistence in the face of environmental change.

ecology↗

bioRxiv2023

Generation time and seasonal migration explain variation in spatial population synchrony across European bird species

O_LISpatial population synchrony is common among populations of the same species and is an important predictor of extinction risk. Despite the potential consequences for metapopulation persistence, we still largely lack understanding of what makes one species more likely to be synchronized than another given the same environmental conditions. C_LIO_LIGenerally, environmental conditions on a shared environment or a species sensitivity to the environment can explain the extent of synchrony. Populations that are closer together experience more similar fluctuations in their environments than those populations that are further apart and are therefore more synchronized. The relative importance of environmental and demographic stochasticity for population dynamics is strongly linked to species life history traits, such as pace of life, why may impact population synchrony. For populations that migrate, there may be multiple environmental conditions at different locations driving synchrony. However, the importance of life history and migration strategies in determining patterns of spatial population synchrony have rarely been explored empirically. We therefore hypothesize that generation time, a proxy for pace of life, and migration play an important role in determining spatial population synchrony. C_LIO_LIWe used population abundance data on breeding birds from four countries to investigate patterns of spatial population synchrony in growth rate and abundance. We investigated differences in synchrony across a gradient of generation times in resident, short-distance migrant, and long-distance migrant bird species. C_LIO_LISpecies with shorter generation times were more synchronized than species with longer generation times. Short-distance migrants were more synchronized than long-distance migrants and resident birds. C_LIO_LIOur results provide novel empirical links between spatial population synchrony and species traits known to be of key importance for population dynamics, generation time and migration characteristics. We show how these different mechanisms can be combined to understand species-specific causes of spatial population synchrony. Understanding these specific drivers of spatial population synchrony is important in the face of increasingly severe threats to biodiversity and could be key for successful future conservation outcomes. C_LI

ecology↗

bioRxiv2023

Long-term herbivore removal experiments reveal different impacts of geese and reindeer on vegetation and ecosystem CO2-fluxes in high-Arctic tundra

O_LIGiven the current and anticipated rates of global change, with associated shifts in herbivore population densities, understanding the role of different herbivores in shaping ecosystem structure and processes is critical for predicting ecosystem responses. Here, we examined the controls exerted by migratory geese and resident, non-migratory ungulates, two dominating yet functionally contrasting herbivores, on the rapidly warming Arctic tundra. C_LIO_LIWe collected vegetation and ecosystem carbon flux data at peak plant growing season in the two longest running herbivore removal experiments in high-Arctic Svalbard. Herbivore exclosures had been set up independently in a wet habitat utilised by barnacle geese (Branta leucopsis) in summer and in mesic-to-dry habitats utilised by wild reindeer (Rangifer tarandus platyrhynchus) year-round. C_LIO_LIExcluding geese produced vegetation state transitions from heavily grazed, moss-dominated (4 g m-2 dry weight of live aboveground vascular plants) to ungrazed, graminoid-dominated (60 g m-2; after 4-yr exclusion) and then horsetail-dominated (150 g m-2; after 15-yr exclusion) tundra. This caused large increases in vegetation carbon and nitrogen pools, dead biomass and moss-layer depth. Modifications in nitrogen concentrations and carbon-to-nitrogen ratios of vegetation and soil suggested overall slower nutrient cycling rates in the short-term absence of geese. Long-term goose removal quadrupled the net ecosystem carbon sequestration by increasing gross ecosystem photosynthesis more than ecosystem respiration. C_LIO_LIExcluding reindeer for 21 years also produced detectable, but weaker, increases in live and dead biomass, vegetation carbon and nitrogen pools, moss-layer depth and ecosystem respiration. Yet, reindeer removal did not alter the chemistry of either vegetation or soil, nor net ecosystem carbon sequestration. C_LIO_LIOur findings suggest that, though both herbivores were key drivers of ecosystem structure and processes, localised effects of geese, highly concentrated in space and time, are larger than those exerted by more widely dispersed reindeer. We illustrate that the impacts of herbivory across the tundra landscape are contingent on the habitat utilised for foraging, its sensitivity, the exerted grazing pressure, and herbivore characteristics. Our results underscore the conspicuous heterogeneity in how Arctic herbivores control ecosystem functioning, with important implications under current and future global change. C_LI

ecology↗

bioRxiv2022

Contrasting genomic consequences of anthropogenic reintroduction and natural recolonisation in high-arctic wild reindeer

Anthropogenic reintroduction can supplement natural recolonisation in reestablishing a species distribution and abundance. However, both reintroductions and recolonisations can give rise to population bottlenecks that reduce genetic diversity and increase inbreeding, potentially causing accumulation of genetic load and reduced fitness. Most current populations of the endemic high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus) originate from recent reintroductions or recolonisations following regional extirpations due to past overharvesting. We investigated and compared the genomic consequences of these two paths to reestablishment using whole-genome shotgun sequencing of 100 Svalbard reindeer across their range. We found little admixture between reintroduced and natural populations. Two reintroduced populations, each founded by 12 individuals around four decades (i.e. 8 reindeer generations) ago, formed two distinct genetic clusters. Compared to the source population, these populations showed only small decreases in genome-wide heterozygosity and increases in inbreeding and lengths of runs of homozygosity. In contrast, the two naturally recolonised populations without admixture possessed much lower heterozygosity, higher inbreeding, and longer runs of homozygosity, possibly caused by serial population bottlenecks and/or fewer or more genetically related founders than in the reintroduction events. Naturally recolonised populations can thus be more vulnerable to the accumulation of genetic load than reintroduced populations. This suggests that in some organisms even small-scale reintroduction programs based on genetically diverse source populations can be more effective than natural recolonisation in establishing genetically diverse populations. These findings warrant particular attention in the conservation and management of populations and species threatened by habitat fragmentation and loss.

genomics↗

bioRxiv2021

Towards rainy Arctic winters: experimental icing impacts tundra plant productivity and reproduction

The Arctic is warming rapidly, with winters warming up to seven times as fast as summers in some regions. Warm spells in winter lead to more frequent extreme rain-on-snow events that alter snowpack conditions and can encapsulate tundra vegetation in basal ice ( icing) for several months. However, tundra climate change studies have mainly focused on summer warming. Here, we investigate icing effects on vascular plant phenology, productivity, and reproduction in a pioneer field experiment in high Arctic Svalbard, simulating rain-on-snow and resultant icing in five consecutive winters, assessing vascular plant responses throughout each subsequent growing season. We also tested whether icing responses were modified by experimentally increased summer temperatures. Icing alone delayed early phenology of the dominant shrub, Salix polaris, but with evidence for a catch-up (through shortened developmental phases and increased community-level primary production) later in the growing season. This compensatory response occurred at the expense of delayed seed maturation and reduced community-level inflorescence production. Both the phenological delay and allocation trade-offs were associated with icing-induced lags in spring thawing and warming of the soil, crucial to regulating plant nutrient availability and acquisition. Experimental summer warming modified icing effects by advancing and accelerating plant phenology (leaf and seed development), thus increasing primary productivity already early in the growing season, and partially offsetting negative icing effects on reproduction. Thus, winter and summer warming must be considered simultaneously to predict tundra plant climate change responses. Our findings demonstrate that winter warm spells can shape high Arctic plant communities to a similar level as summer warming. However, the absence of accumulated effects over the years reveals an overall resistant community which contrasts with earlier studies documenting major die-off. As rain-on-snow events will be rule rather than exception in most Arctic regions, we call for similar experiments in coordinated circumpolar monitoring programmes across tundra plant communities.

plant biology↗