Hannula, S. E. | bioRxiv Science

bioRxiv2026

Isotope Labeling Reveals Complex Microbial Interactions during Agaricus bisporus Compost Colonization

Microbial interactions strongly influence carbon and nitrogen flows in mushroom compost, yet their functional roles during Agaricus bisporus colonization remain unresolved. We combined PLFA-SIP and nanoSIMS imaging with ITS amplicon sequencing to follow resource flows and microbial activity across spatial scales. Stable-isotope tracers (13C-glucose and 15N-ammonium) revealed that A. bisporus simultaneously facilitates and suppresses bacterial populations: fungal activity increased glucose assimilation by bacteria yet reduced overall bacterial biomass. NanoSIMS visualized nutrient-rich microenvironments along hyphae where bacterial 13C and 15N assimilation was elevated. Sequencing showed the fungal community to comprise essentially two organisms, A. bisporus and Mycothermus thermophilus, which differ approximately elevenfold in their content of the fungal biomarker C18:2w6,9c. Total fungal PLFA therefore tracks which of the two dominates as much as it tracks fungal biomass. Together these findings reveal coupled fungal-bacterial nutrient processing and show that biomarker-based estimates of fungal biomass require community composition to be known. Multi-scale isotope probing provides a framework for resolving microbial interactions in complex detrital systems.

microbiology↗

bioRxiv2023

Soil legacies of extreme droughts enhance the performance of invading plants

Extreme droughts can weaken the biotic resistance of native plant communities against the establishment of invading plants. However, we know little about the underlying mechanisms. Using a plant-soil feedback approach, we tested how an extreme drought event alters the soil-mediated biotic resistance of resident native plant communities against invading plant species from native and non-native ranges, namely non-resident natives, native range-expanders, and alien plants. We show that all three types of invading plants performed better in soils with a legacy of extreme drought independent of resident native plant diversity. Path models revealed that extreme drought effects on non-resident natives were mediated by the root biomass of resident native plants and endophytic fungal pathogens during drought, whereas alien plant performance was mediated only via the root biomass of resident native plants also during drought. Our results highlight that the performance of resident native plants during extreme drought and subsequent effects on soil fungi determine the performance of invading plants from native and non-native origins after extreme droughts.

ecology↗