Biology subjects

Han, J.-P.

Publications and source records attributed to Han, J.-P..

4 recordsLinked to original sources

bioRxiv2025

GWAs reveals SUBER GENE1-mediated suberization via Type One Phosphatases

Suberin deposition in the root endodermis is critical for plant nutrient acquisition and environmental adaptation. Here, we used an unbiased forward genetic approach based on natural variation across 284 Arabidopsis thaliana accessions to identify novel regulators of endodermal suberization. This screen revealed striking diversity in suberin levels and patterns, uncovering broader roles for suberin beyond those observed in the reference accession Col-0. A genome-wide association study pinpointed SUBER GENE1 (SBG1), a previously uncharacterized gene encoding a 129-amino acid protein, as a key regulator of suberin deposition. SBG1 acts through physical interaction with type one protein phosphatases (TOPPs) via conserved SILK and RVxF motifs. Disrupting this interaction abolishes SBG1 function, while topp mutants exhibit enhanced endodermal suberization, mirroring SBG1 overexpression. Our findings uncover a previously unknown regulatory module linking suberin formation to TOPP activity and ABA signaling and provide a framework for improving plant stress resilience through targeted manipulation of root barrier properties.

plant biology↗

bioRxiv2024

Directional Cell-to-cell Transport in Plant Roots

Cell-to-cell communication is critical for multicellular organisms. In plants, plasmodesmata--cytoplasmic channels--enable molecular transport between adjacent cells. In roots, this transport is predicted to be essential in nutrient acquisition and delivery to the vasculature. We demonstrate that plasmodesmatal transport persists in differentiated roots, despite apoplastic barriers such as Casparian strips and suberin lamellae in the endodermis, suggesting plasmodesmata as the sole pathway for water and nutrient flow at this stage. We also reveal a developmental switch in plasmodesmata function resulting in an unidirectional transport in differentiated roots. A genetic screen identified mutations that disrupt this directionality, leading to bidirectional transport. These mutations correlate with larger plasmodesmatal apertures, linked to defects in pectin composition and cell wall organization. This discovery underscores the role of plasmodesmatal aperture regulation and pectin in controlling directional transport. Our findings provide insights into plasmodesmata function and their regulation in roots.

plant biology↗

bioRxiv2021

Suberin plasticity to developmental and exogenous cues is regulated by a set of MYB transcription factors

Suberin is a hydrophobic biopolymer that can be deposited at the periphery of cells, forming protective barriers against biotic and abiotic stress. In roots, suberin forms lamellae at the periphery of endodermal cells where it plays crucial roles in the control of water and mineral transport. Suberin formation is highly regulated by developmental and environmental cues. However, the mechanisms controlling its spatiotemporal regulation are poorly understood. Here, we show that endodermal suberin is regulated independently by developmental and exogenous signals to fine tune suberin deposition in roots. We found a set of four MYB transcription factors (MYB41, MYB53, MYB92 and MYB93), that are regulated by these two signals, and are sufficient to promote endodermal suberin. Mutation of these four transcription factors simultaneously through genome editing, lead to a dramatic reduction of suberin formation in response to both developmental and environmental signals. Most suberin mutants analyzed at physiological levels are also affected in another endodermal barrier made of lignin (Casparian strips), through a compensatory mechanism. Through the functional analysis of these four MYBs we generated plants allowing unbiased investigations of endodermal suberin function without accounting for confounding effects due to Casparian strip defects, and could unravel specific roles of suberin in nutrient homeostasis.

plant biology↗

bioRxiv2020

A mechanism for sensing of and adaptation to K+ deprivation in plants

Potassium ions (K+) are essential for manifold cellular processes. Organismal K+ homoeostasis requires sensing of K+ availability, efficient uptake and defined distribution. Roots are the organ for K+ uptake in plants and soil K+ availability shapes root growth and architecture1. Important channels and transporters conveying cellular K+ fluxes have been described2,3. Understanding K+ sensing and the mechanisms that orchestrate downstream responses exemplifies how environmental conditions integrate with root development and is essential to advance plant nutrition for sustainable agriculture. Here, we report where plants sense K+ deprivation and how this translates into spatially defined ROS signals to trigger HAK5 K+ uptake transporter induction and accelerated maturation of the Casparian strip (CS) paracellular barrier. We define the organ scale K+ pattern of roots and identify a postmeristematic K+-sensing niche (KSN) defined by rapid K+ decline and Ca2+ signals. We discover a Ca2+-triggered bifurcating low-K+ signalling (LKS) axis in that LK-enhanced CIF peptide signalling reinforces SGN3-LKS4/SGN1 receptor kinase complex activation. As consequence, activation of the NOXs RBOHC and RBOHD conveys transcriptome adaptation including HAK5 induction and accelerated CS maturation superimposed on the RBOHF-executed default CS formation. These mechanisms synchronise developmental differentiation and transcriptome reprogramming for maintaining K+ homoeostasis and optimising nutrient foraging by roots.

plant biology↗