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Hamrick, A.

Publications and source records attributed to Hamrick, A..

3 recordsLinked to original sources

Early resolution of sister chromatids during C. elegans meiosis

Segregating a complete set of chromosomes into the gametes relies on exchanges of genetic material that occur during meiosis. It is only exchanges that form between the similar parental chromosomes (homologs), rather than between the identical sister chromatids, that enable correct chromosome segregation (Zickler and Kleckner 2023). Despite the crucial role of biasing exchanges toward the homolog and the progress in defining some of its regulators (Niu et al. 2009; Goldfarb and Lichten 2010; Lao and Hunter 2010; Kim et al. 2010; Hong et al. 2013), the mechanism that efficiently identifies the homolog and avoids the sister remains unknown. Understanding homolog bias requires knowledge of how the homologs and sisters are organized relative to each other, and how this positioning is established. Here, we use selective labeling of a single sister in the oogenic germline of the nematode Caenorhabditis elegans to define the organization of the sister chromatids at the time exchanges form. We find that pairs of sisters are already well separated (resolved) early in meiosis, despite being tethered to each other at numerous positions along their length. The sisters are resolved in both aligned and unaligned homologs, and their resolution does not require condensins or a prolonged time in meiotic prophase. However, depleting the cohesin loader NIPBLSCC-2 impairs sister resolution, suggesting that an active process - likely loop extrusion by cohesins - de-mixes and resolves the sisters. Our work shows that inter-homolog meiotic exchanges form when the four sister chromatids occupy distinct volumes, suggesting that homolog bias is unlikely to rely on relative proximity. The conservation of meiotic chromosome organization and of cohesins loop-extruding activity suggests that our findings are broadly applicable.

cell biology↗

Kinetic analysis of strand invasion during C. elegans meiosis reveals similar rates of sister- and homolog-directed repair

AbstractMeiotic chromosome segregation requires reciprocal exchanges between the parental chromosomes (homologs). Exchanges are formed via tightly-regulated repair of double-strand DNA breaks (DSBs). However, since repair intermediates are mostly quantified in fixed images, our understanding of the mechanisms that control the progression of repair remains limited. Here, we study meiotic repair kinetics in Caenorhabditis elegans by extinguishing new DSBs and following the disappearance of a crucial intermediate - strand invasion mediated by the conserved RecA-family recombinase RAD-51. We find that RAD-51 foci have a half-life of 42-132 minutes for both endogenous and exogenous DSBs. Surprisingly, we find that repair templated by the sister chromatid is not slower than repair templated by the homolog. This suggests that differential kinetics are unlikely to underlie homolog bias: the preferential use of the homolog as a repair template. We also use our kinetic information to revisit the total number of DSBs per nucleus - the substrate for the formation of exchanges - and find an average of 40 DSBs in wild-type meiosis and >50 DSBs when homolog pairing is perturbed. Our work opens the door for analysis of the interplay between meiotic repair kinetics and the fidelity of genome inheritance. Key pointsO_LIBy extinguishing new meiotic DSBs, we define the lifetime of a key repair intermediate. C_LIO_LIWe find similar rates of meiotic DNA repair templated by the sister and the homolog. C_LIO_LIKinetic information allows calculation of the total number of meiotic DSBs in C. elegans. C_LI

genetics↗

Rescue of blood coagulation Factor VIII exon-16 mis-splicing by antisense oligonucleotides

The human Factor VIII (F8) protein is essential for the blood coagulation cascade and specific F8 mutations cause the rare bleeding disorder Hemophilia A (HA). Here, we investigated the impact of HA-causing single-nucleotide mutations on F8 pre-mRNA splicing. We found that 14/97 ([~]14.4%) coding sequence mutations tested in our study induced exon skipping. Splicing patterns of 4/11 ([~]36.4%) F8 exons tested were especially sensitive to the presence of common disease-causing mutations. RNA-chemical probing analyses revealed a three-way junction structure at the 3' end of intron 15 (TWJ-3-15). TWJ-3-15 sequesters the polypyrimidine tract, a key determinant of 3' splice site strength. Using exon-16 of the F8 gene as a model, we designed specific antisense oligonucleotides (ASOs) that target TWJ-3-15 and identified three that promote the splicing of F8 exon-16. Interaction of TWJ-3-15 with ASOs increases accessibility of the polypyrimidine tract and inhibits the binding of hnRNPA1-dependent splicing silencing factors. Moreover, ASOs targeting TWJ-3-15 rescue diverse splicing-sensitive HA-causing mutations, most of which are distal to the 3 splice site being impacted. The TWJ-3-15 structure and its effect on mRNA splicing provide a model for HA etiology in patients harboring specific F8 mutations and provide a framework for precision RNA-based HA therapies.

molecular biology↗