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Hamaji, T.

Publications and source records attributed to Hamaji, T..

4 recordsLinked to original sources

Synergistic effects of proteinaceous pheromone and nitrogen starvation on male gametogenesis in the anisogamous volvocine alga Eudorina

In volvocine algae, gametogenesis is triggered by different cues depending on the species and their sexual systems. In isogamous unicellular organisms such as Chlamydomonas reinhardtii, which produce gametes of equal size and morphology, nitrogen depletion induces gametogenesis. In contrast, in oogamous multicellular species of the genus Volvox, which produce large, immobile eggs and small motile sperm, male gametogenesis is induced by a sex pheromone secreted by sperm packets (SPs), i.e., bundles of male gametes. Eudorina, an anisogamous multicellular volvocine alga that produces motile gametes of different sizes, is known to form SPs under nitrogen-depleted conditions. Intriguingly, a pheromone-like factor, present in male conditioned medium (CM), has also been implicated in SP formation. To clarify the relative contributions of nitrogen starvation and pheromone signaling, we conducted semi-quantitative analyses of SP induction using synchronously cultured male colonies of Eudorina. When CM was added to male cultures during an early maturation stage, most colonies formed SPs regardless of nitrogen availability. However, when the CM was diluted 100- to 100,000-fold, SP formation was significantly more efficient under nitrogen-depleted conditions than under nitrogen-replete conditions. Notably, SPs never formed without the addition of CM, even in a nitrogen-depleted medium. The SP-inducing activity of the CM was found to markedly decrease with protease treatment. These findings suggest that spermatogenesis in Eudorina is induced by a proteinaceous sex pheromone secreted by male colonies, and that nitrogen depletion, while not essential, enhances this pheromone activity.

cell biology↗

Comparative Extraction of Cellular Features from High-Resolution Volume Imaging

High-resolution volume imaging techniques, such as lattice light-sheet microscopy (LLSM), generate vast and complex datasets that demand advanced analytical approaches to uncover biologically meaningful insights. While LLSMs high spatial and temporal resolution provides critical data for understanding cellular processes, distinguishing subtle differences between cells in distinct states remains challenging. Here, using an adaptive, human-interpretable kernel-based calculation strategy, we developed Machine-Learning-Based Visual Extraction of Structural Features (M-VEST), a method designed to identify and interpret structural differences with high precision. By applying M-VEST to mitotic cells, we uncovered novel functions of the oncogene Aurora kinase A, demonstrating its utility in revealing previously undetected features. Validated using LLSM datasets, M-VEST offers a scalable framework for analyzing large and complex imaging data, advancing insights into cellular dynamics and beyond.

bioinformatics↗

A conserved RWP-RK transcription factor VSR1 controls gametic differentiation in volvocine algae

Volvocine green algae are a model for understanding the evolution of mating types and sexes. They are facultatively sexual, with gametic differentiation occurring in response to nitrogen starvation (-N) in most genera, and to sex inducer hormone (SI) in Volvox. The conserved RWP RK family transcription factor (TF) MID is encoded by the minus mating type (MT) locus or male sex-determining region (SDR) of heterothallic volvocine species and dominantly determines minus or male gametic differentiation. However, the factor(s) responsible for establishing the default plus or female differentiation programs have remained elusive. We performed a phylo transcriptomic screen for autosomal RWP-RK TFs induced during gametogenesis in unicellular isogamous Chlamydomonas reinhardtii (Chlamydomonas) and in multicellular oogamous Volvox carteri (Volvox) and identified a single conserved ortho-group we named Volvocine Sex Regulator 1 (VSR1). Chlamydomonas vsr1 mutants of either mating type failed to mate and could not induce expression of key mating-type-specific genes. Similarly, Volvox vsr1 mutants in either sex could initiate sexual embryogenesis, but the presumptive eggs or androgonidia (sperm packet precursors) were infertile and unable to express key sex-specific genes. Yeast two-hybrid assays identified a conserved domain in VSR1 capable of self-interaction or interaction with the conserved N terminal domain of MID. In vivo co-immunoprecipitation experiments demonstrated association of VSR1 and MID in both Chlamydomonas and Volvox. These data support a new model for volvocine sexual differentiation where VSR1 homodimers activate expression of plus/female gamete-specific-genes, but when MID is present MID-VSR1 heterodimers are preferentially formed and activate minus/male gamete-specific-genes. Significance StatementSex and recombination are conserved features of eukaryotic life cycles, but sex determination mechanisms are diverse, and are poorly understood in most major taxa. Our study identified a long-sought regulator of sexual differentiation in volvocine green algae--the RWP-RK family transcription factor (TF) VSR1-- leading to the first complete paradigm for mating type or sex determination in this lineage. Our results support a model where gametically expressed VSR1 homodimerizes and activates plus/female specific genes. When the dominant sex-linked minus/male RWP-RK family TF MID is present MID-VSR1 heterodimers are preferentially formed and activate minus/male genes. The widespread association of RWP-RK TFs with gamete differentiation in the green lineage suggests that a similar paradigm may operate throughout the plant kingdom.

genetics↗

APC mutant cells exploit compensatory chromosome alterations to restore tumour cell fitness

Cancer cells tolerate copy number alterations (CNAs) of genomic regions that are lethal to non-cancer cells. Certain CNAs are preferentially associated with specific cancer types and lineages, but the mechanisms underlying the emergence and selection of specific CNAs remain unclear. Adenomatous polyposis coli (APC) mutations induce mitotic errors, but their impact on tumor evolution remains elusive. We investigated APC function in cultured cells and tumors and found that its loss led to {beta}-catenin accumulation at centrosomes, suppressing its maturation through inhibition of key centrosome regulators, including Aurora kinase A (AURKA) that promotes tumor growth. These defects collectively reduced cellular fitness, leading to impaired mitotic fidelity and delayed cell cycle progression. However, in APC-mutant tumors, AURKA activity was maintained, at least in part, through the amplification of chromosomes harboring AURKA and its activator genes, yet this alone was insufficient to fully restore proliferation: aberrant chromosomal reorganization also emerged and contributed to the adaptive fitness of APC-mutant cells. Such a process of adaptive CNA selection provides a framework for understanding how specific CNAs are selected to counteract disadvantages imposed by genetic alterations during tumor progression, providing one key insight into how specific CNAs are selected in this context.

cell biology↗