Quantifying biofilm propagation on chemically modified surfaces
Conditions affecting biofilm formation differ among bacterial species and this presents a challenge to studying biofilms in the lab. This work leverages functionalized silanes to control surface chemistry in the study of early biofilm propagation, quantified with a semi-automated image processing algorithm. These methods support the study of Pantoea sp. YR343, a gram-negative bacterium isolated from the poplar rhizosphere. We found that Pantoea sp. YR343 does not readily attach to hydrophilic surfaces but will form biofilms with a "honeycomb" morphology on hydrophobic surfaces. Our image processing algorithm described here was used to quantify this honeycomb morphology over time and displayed a logarithmic behavior in the propagation of the honeycomb biofilm. This methodology was repeated with a flagella-deficient fliR mutant of Pantoea sp. YR343 which resulted in reduced surface attachment. Quantifiable differences between Pantoea WT and {Delta}fliR biofilm morphologies were captured by the image processing algorithm, further demonstrating the insight gained from these methods.