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Gutman, J.

Publications and source records attributed to Gutman, J..

3 recordsLinked to original sources

Unraveling the Dual Immunomodulatory and Immunogenic Roles of the Central Conserved Cysteine-Rich Region in Respiratory Syncytial Virus G Protein

Respiratory syncytial virus (RSV) causes severe respiratory disease in infants and high-risk adults, in part by subverting host immunity. The RSV G glycoproteins central conserved cysteine-rich domain (CCD) contains a CX3C motif implicated in immune modulation, but the relationship between CCD redox state, structure and function is unresolved. We recombinantly expressed a CCD peptide (Gpep, residues 149-196) and combined structural and biophysical characterizations with cellular immunology and human serology to define how redox-dependent conformations govern immunogenicity and immunomodulation. Reduced Gpep is compact and rapidly folds via a dominant intermediate into an oxidized, extended monomer; at higher concentrations intermolecular disulfide isomerization produces covalent oligomers. Functionally, monomeric Gpep potently suppresses innate and adaptive activation inhibiting LPS- or UV-inactivated RSV-induced maturation of mouse bone marrow-derived dendritic cells, reducing antigen-specific CD4+ T cell proliferation and IFN-{gamma} production, and attenuating multiple human neutrophil responses (chemotaxis, CD11b upregulation, ROS, MPO release and NET formation), without cytotoxicity. Oligomerized Gpep lacks these suppressive activities. To link molecular mechanism and human exposure, analysis of sera from an ambulatory pediatric cohort (0-72 months) showed a progressive transient increase in the anti-F/anti-G IgG ratio with repeated early RSV exposures, maturating into a functional 2 to 3 ratio. This serologic shift is consistent with previously reported enrichment of F-directed neutralizing immunity. We propose a redox-dependent immune-evasion model in which soluble, monomeric G mediates transient immunosuppression that is removed by disulfide-driven oligomerization, which may occur in membrane-bound G. This may impact therapeutic strategies that commonly favor F-focused responses. ImportanceRespiratory syncytial virus (RSV) remains a leading cause of severe respiratory disease in young children and high-risk adults. This study identifies a chemical switch in a small conserved region of the RSV attachment protein that changes its shape and immune activity: when the region is present as a soluble, single chain, it transiently suppresses key innate and adaptive immune cells, but this activity is lost upon disulfide-mediated oligomerization. We also show that repetitive RSV exposures in early life bias the antibody response, initially boosting antibody responses toward the Fusion protein, rather than this conserved central region. Together, these results may uncover a mechanism by which RSV shapes the host immune response explaining the features of antibody development in children. Understanding this redox-dependent balance between immune evasion and antigenicity will inform safer vaccine and antibody strategies against RSV.

immunology↗

The Impact of Antimalarial Resistance on the Genetic Structure of Plasmodium falciparum in the DRC

The Democratic Republic of the Congo (DRC) harbors 11% of global malaria cases, yet little is known about the spatial and genetic structure of the parasite population in that country. We sequenced 2537 Plasmodium falciparum infections, including a nationally representative population sample from DRC and samples from surrounding countries, using molecular inversion probes - a novel high-throughput genotyping tool. We identified an east-west divide in haplotypes known to confer resistance to chloroquine and sulfadoxine-pyrimethamine. Furthermore, we identified highly related parasites over large geographic distances, indicative of gene flow and migration. Our results were consistent with a background of isolation by distance combined with the effects of selection for antimalarial drug resistance. This study provides a high-resolution view of parasite genetic structure across a large country in Africa and provides a baseline to study how implementation programs may impact parasite populations.

genomics↗

Bacterial genome reduction as a result of short read sequence assembly

High-throughput comparative genomics has changed our view of bacterial evolution and relatedness. Many genomic comparisons, especially those regarding the accessory genome that is variably conserved across strains in a species, are performed using assembled genomes. For completed genomes, an assumption is made that the entire genome was incorporated into the genome assembly, while for draft assemblies, often constructed from short sequence reads, an assumption is made that genome assembly is an approximation of the entire genome. To understand the potential effects of short read assemblies on the estimation of the complete genome, we downloaded all completed bacterial genomes from GenBank, simulated short reads, assembled the simulated short reads and compared the resulting assembly to the completed assembly. Although most simulated assemblies demonstrated little reduction, others were reduced by as much as 25%, which was correlated with the repeat structure of the genome. A comparative analysis of lost coding region sequences demonstrated that up to 48 CDSs or up to ~112,000 bases of coding region sequence, were missing from some draft assemblies compared to their finished counterparts. Although this effect was observed to some extent in 32% of genomes, only minimal effects were observed on pan-genome statistics when using simulated draft genome assemblies. The benefits and limitations of using draft genome assemblies should be fully realized before interpreting data from assembly-based comparative analyses.

genomics↗