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Gurarie, V.

Publications and source records attributed to Gurarie, V..

2 recordsLinked to original sources

Scaling, correlations, and artifacts in biological timeseries

SO_SCPLOWUMMARYC_SCPLOWTime is a key variable in biology. Conceptual and methodological advances focused recent studies of timing in biological systems on monitoring trait dynamics in singled individuals. Here we contribute to this effort by analyzing general properties of individual timeseries. We make four broad claims. First, we show that for traits that range from behavior in animals, to growth in plants, to division timing in cell lineages, faster timeseries tend to be comprised of consistently shorter sub-stages, not a few unusually fast sub-stages. We demonstrate that this property constitutes a particular type of scaling that can be readily detected by a straightforward comparison of absolute and relative variability within timeseries data for any trait. We show that correlations within timeseries are necessary and sufficient for the type of scaling we describe and infer that the ubiquitous occurrence of scaling results from natural correlations within the continuous processes that govern trait dynamics. Second, failing to observe scaling indicates a break in correlation and, we argue, a switch in the mechanisms underlying the rate of trait change. Third, we caution that analyses of individual timeseries are highly susceptible to batch effects, but contend that it is possible to detect signal despite the artifactual correlations introduced by batching. Finally, we show that the timing of biological process that scale is overdispersed compared to matched but uncorrelated comparisons; this is an advantage in variable environments. Our results advance understanding of common properties of biological timeseries and offer practical tools for their further study.

systems biology↗

Inferring temporal organization of postembryonic development from high-content behavioral tracking

AO_SCPLOWBSTRACTC_SCPLOWUnderstanding temporal regulation of development remains an important challenge. Whereas average, species-typical timing of many developmental processes has been established, less is known about inter-individual variability and correlations in timing of specific events. We addressed these questions in the context of postembryonic development in Caenorhabditis elegans. Based on patterns of locomotor activity of freely moving animals, we inferred durations of four larval stages (L1-L4) in over 100 individuals. Analysis of these data supports several notable conclusions. Individuals have consistently faster or slower rates of development because durations of L1 through L3 stages are positively correlated. The last larval stage, the L4, is less variable than earlier stages and its duration is largely independent of the rate of early larval development, implying existence of two distinct larval epochs. We argue that characteristic patterns of variation and correlation arise because duration of each stage tends to scale relative to total developmental time. This scaling relationship suggests that each larval stage is not limited by an absolute duration, but is instead terminated when a subset of events that must occur prior to adulthood have been completed. The approach described here offers a scalable platform that will facilitate the study of temporal regulation of postembryonic development.

developmental biology↗