bioRxiv Science⌕ Search

Biology subjects

Grigoryan, H.

Publications and source records attributed to Grigoryan, H..

2 recordsLinked to original sources

Molecular Cloning and Biochemical Characterisation of a Novel Acidic Laminarinase Derived from Jermuk Hot Spring Metagenome

Laminarinase, an enzyme with a specific affinity for laminarin--a complex polysaccharide found in the cell walls of brown algae and select marine organisms--was investigated in this study. We cloned and characterised a gene encoding a putative glycoside hydrolase family 16 (GH16) laminarinase from the Jermuk hot spring metagenome by heterologous expression in Escherichia coli. The resulting product, named Jermuk-LamM, represents a novel endo-1,3-{beta}-D-glucanase (EC 3.2.1.39) with only 48.1 % amino acid sequence similarity to previously characterised GH16 family members catalogued in the NCBI database. To date, this stands as the sole described endo-1,3-{beta}-D-glucanase within the Marinimicrobia phylum. Jermuk-LamM, identified as an acidic laminarinase, exhibits robust enzymatic activity at pH 5.0 and a temperature of 55 {degrees}C, maintaining its function for a duration of at least 7 hours. Notably, this enzyme effectively catalyses the hydrolysis of both soluble and insoluble (1,3)-{beta}-D-glucans, as well as (1,3;1,4)-{beta}-D-glucans, displaying a pronounced preference for laminarin. The specificity of Jermuk-LamM lies in its cleavage of 1,3-{beta}-D-glucosidic linkages, yielding monosaccharides, disaccharides, and oligosaccharides. These breakdown products hold the potential for conversion into energy carriers, including alcohols, methane, and hydrogen. The enzymes exceptional specific activities, coupled with its resistance to various additives, render Jermuk-LamM a promising candidate for various industrial applications, encompassing the realms of biofuel and pharmaceutical production.

biochemistry↗

adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

SummaryLiquid chromatography-high resolution mass spectrometry (LC-HRMS) has been used to establish a method, referred to as adductomics, for characterisation of putative protein adducts at selected loci in human serum albumin (HSA). Applications of this method have been limited by the lack of software for untargeted analysis of modified peptides in protein digests. Here we present adductomicsR, an open-source R package for processing LC-HRMS data from analysis of adducted HSA peptides. The software interrogates mass spectra to correct for retention-time drift, and to discover and quantify putative adducts along with those for a housekeeping peptide and internal standard.\n\nAvailability and implementationadductomicsR is written in R and publicly available at https://github.com/JosieLHayes/adductomicsR, which includes a vignette with example data.\n\nSupplementary informationmzXML files for the vignette and test dataset are available in an associated data package adductData (https://github.com/JosieLHayes/adductData).\n\nContactjosie.hayes@berkeley.edu\n\nIssue SectionAPPLICATIONS NOTE

bioinformatics↗