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Griffith, G. W.

Publications and source records attributed to Griffith, G. W..

5 recordsLinked to original sources

AberTrap: an open-source, lightweight, programmable sampler of airborne biological particles

1. Context. Capturing and identifying airborne biological matter (bioaerosols) enables detailed characterisation of ecological communities, but the cost and weight of existing commercially available active air samplers limits the deployment of multiple devices needed to realise this potential. 2. Method. We present the AberTrap, a lightweight (~50g), open-source (CC-BY-SA), programmable rotating-arm bioaerosol sampler that can be self-built from common laboratory components and makerspace equipment at low cost (ca {pound}20 per unit, exc. power supply). To characterise the device's performance, we first explored the influence of rotational speed and paddle design on aerosol capture under controlled conditions, using fluorescein and a range of biological aerosols (4.5-33 m). To demonstrate its utility for ecological applications, we then validated field performance in a species-rich broadleaf woodland (England, UK), deploying eight samplers over five days and identifying captured fungal aerosols by ITS2 metabarcoding. 3. Key results. Modifying paddle design allowed us to influence particle selection and capture efficiency. Slotted paddles captured significantly more aerosols than plain paddles despite sampling less air, which we traced to the concentration of aerosols at the paddle leading edges. This effect was most pronounced for the smallest particles and outweighs the influence of rotational speed. In the field, 20 daily samples (four samplers over five days) detected 2,431 fungal taxa, 78.9% of the Chao2-estimated total fungal richness. A single sampler captured only 59% of this richness. Continuous 5-day sampling recovered 78% of the taxa detected by daily sampling, indicating only modest paddle saturation over this period. Our time segregated design allowed us to infer dispersal dynamics; 35% of taxa were recorded only on one day, and 19% recorded across all five days. Overall, replicate AberTraps provided high sampling completeness. 4. Implications. The AberTrap provides a low-cost, lightweight and programmable alternative to commercial rotating-arm samplers, enabling levels of spatial and temporal replication impractical with existing devices. Low cost and portability facilitate deployment in remote or resource-limited contexts. Its open-source, adaptable design allows the device to be tailored for applications in biodiversity assessment, pathogen surveillance and ecological monitoring.

ecology↗

Revisions to the Gliophorus irrigatus complex (Agaricales, Hygrophoraceae, Gliophorus, section Unguinosae) including a new waxcap, G. alboviscidus, from the UK but detected globally via soil eDNA, two new species from eastern North America, G. fumosus and G. parafumosus, plus a new species, G. calunus, and a new combination of Hygrophorus subaromaticus in Gliophorus from western North America.

Here we report the discovery of four new agaricoid fungi in the Gliophorus irrigatus complex of the family Hygrophoraceae. Gliophorus alboviscidus sp. nov. from the UK is morphologically identical to the European G. irrigatus (which we neotypify), except that its basidiome is white or pale Buff coloured vs brownish grey. Two new species from eastern North America, Gliophorus fumosus sp. nov. (provisional name Gliophorus sp. irrigatus-IN01), and Gliophorus parafumosus sp. nov (previously labelled G. irrigatus) resemble G. irrigatus s.s. in colour and morphology but their distributions are restricted to North America. Phylogenetic reconstruction revealed that these samples form distinct clades, with >10% ITS sequence divergence from European G. irrigatus s.s. and from each other. Though G. alboviscidus sp. nov. is currently known only from two locations in the UK, searches for related sequences from eDNA (environmental DNA) sequence repositories (UNITE/GlobalFungi) suggested that this species is more widely distributed in Eurasia. G. fumosus and G. parafumosus sequences from eastern North America were divergent from both European G. irrigatus and G. alboviscidus; both were more closely related to another species with a strong odour and white/Buff basidiomes from northwestern North America, Hygrophorus subaromaticus for which we sequenced the holotype and recombine in the genus Gliophorus. We also describe a new species from northwestern North America, G. calunus sp. nov. (provisional name Gliophorus sp. irrigatus-CA01), based on vouchered specimens photographed and sequenced by an paraprofessional group, CA FUNDIS. We highlight the importance of citizen scientist groups and paraprofessionals in documenting macrofungal species and their distributions via databases such as iNaturalist, Mushroom Observer and MycoMap. Further, we discuss reasons eDNA distributions are often larger than known distributions of basidiomes, including G. alboviscidus and G. fumosus.

evolutionary biology↗

Flavoceraceomyces (NOM. PROV.) (Irpicaceae, Basidiomycota), encompassing Ceraceomyces serpens and Ceriporia sulphuricola, and a new resupinate species, F. damiettense, found on Phoenix dactylifera (date palm) trunks in the Nile Delta of Egypt

The taxonomy of Polyporales is complicated by the variability in key morphological characters across families and genera, now being gradually resolved through molecular phylogenetic analyses. Here a new resupinate species, Flavoceraceomyces damiettense (NOM. PROV.) found on the decayed trunks of date palm (Phoenix dactylifera) trees in the fruit orchards of the Nile Delta region of Egypt is reported. Multigene phylogenetic analyses based on ITS, LSU, EF1, RPB1 and RPB2 loci place this species in Irpicaceae, and forming a distinct clade with Ceraceomyces serpens and Ceriporia sulphuricolor, which we also incorporate into a new genus Flavoceraceomyces (NOM. PROV.). The honey-yellow basidiomes with white margins and presence of crystal-encrusted hyphae in the hymenium and subiculum are distinctive features of Flavoceraceomyces (NOM. PROV.), despite variability in hymenium morphology and presence of clamp connections and cystidia, as noted for other genera within Irpicacae. F. damiettense is hitherto consistently associated with date palms killed by the red palm weevil Rhynchophorus ferrugineus, a highly damaging and invasive pest, recently spread to the Mediterranean region. F. damiettense causes rapid wood decay by a potentially unusual white-rot mechanism and may play a role in the damage caused by R. ferrugineus.

microbiology↗

Seven new Neocallimastigomycota genera from fecal samples of wild, zoo-housed, and domesticated herbivores: Description of Ghazallomyces constrictus gen. nov., sp. nov., Aklioshbomyces papillarum gen. nov., sp. nov., Agriosomyces longus gen. nov., sp. nov., Capellomyces foraminis gen. nov., sp. nov. and Capellomyces elongatus sp. nov., Joblinomyces apicalis gen. nov., sp. nov., Khoyollomyces ramosus gen. nov., sp. nov., and Tahromyces munnarensis gen. nov., sp. nov.

We isolated and characterized sixty-five anaerobic gut fungi (AGF, Neocallimastigomycota) strains from fecal samples of five wild (W), one zoo-housed (Z), and three domesticated (D) herbivores in the US states of Texas (TX) and Oklahoma (OK), Wales (WA), and the Indian states of Kerala (KE) and Haryana (HA). Phylogenetic assessment based on D1-D2 region of the large rRNA subunit (LSU) identified seven distinct lineages, with strains recovered from Axis Deer (W-TX) clustering within the Orpinomyces-Neocallimastix-Pecoramyces-Feramyces clade; Boer Goat-domesticated Goat strains (W-TX, D-KE) clustering within the Oontomyces-Anaeromyces-Liebetanzomyces clade; and domesticated Goat and Sheep strains (D-HA) as well as Nilgiri Tahr strains (W-KE) forming two distinct clades associated with genus Buwchfawromyces. The remaining three lineages, represented by strains recovered from Mouflon-Boer Goat (W-TX), White Tailed Deer (W-OK), and Zebra-Horse (Z-OK, and D-WA), displayed no specific suprageneric affiliation. All strains displayed monocentric thalli and produced mono/uniflagellate zoospores with the exception of Axis Deer strains, which produced polyflagellate zoospores. Isolates displayed multiple interesting microscopic features including sporangia with tightly constricted necks and fine septa at the base (Axis Deer), papillated and pseudo-intercalary sporangia (White-Tailed Deer), swollen sporangiophores and zoospores with long flagella (Mouflon-Boer Goat), zoospore release through an apical pore followed by either sporangial wall collapse (Axis Deer and Boer Goat-domesticated Goat) or sporangial wall remaining intact after discharge (Zebra-Horse), multi-sporangiated thalli with branched sporangiophores (Zebra-Horse), and short sporangiophores with subsporangial swellings (Nilgiri Tahr). Internal transcribed spacer-1 region (ITS-1) sequence analysis indicated that Zebra-Horse strains are representatives of the AL1 lineage, frequently encountered in culture-independent surveys of the alimentary tract and fecal samples from hindgut fermenters. The other six lineages, five of which were isolated from wild herbivores, have not been previously encountered in such surveys. Our results significantly expand the genus level diversity within the Neocallimastigomycota, and strongly suggest that wild herbivores represent a yet-untapped reservoir of AGF diversity. We propose the creation of seven novel genera and eight novel Neocallimastigomycota species to accommodate these strains, for which we propose the names Agriosomyces longus (Mouflon and wild Boer Goat), Aklioshbomyces papillarum (White tailed Deer), Capellomyces foraminis (wild Boar Goat) and C. elongatus (domesticated Goat), Ghazallomyces constrictus (Axis Deer), Joblinomyces apicalis (domesticated Goat and Sheep), Khoyollomyces ramosus (Zebra-Horse), and Tahromyces munnarensis (Nilgiri Tahr). The type species are strains Axs-31, WT-2, MS-4, BGB-11, GFKJa1916, GFH683, ZS-33, and TDFKJa193, respectively.

microbiology↗

Temperate grass allergy season defined by spatio-temporal shifts in airborne pollen communities

Grass pollen is the worlds most harmful outdoor aeroallergen and sensitivity varies between species. Different species of grass flower at different times, but it is not known how airborne communities of grass pollen change in time and space. Persistence and high mobility of grass pollen could result in increasingly diverse seasonal pollen communities. Conversely, if grass pollen does not persist for an extended time in the air, shifting pollen communities would be predicted throughout the summer months. Here, using targeted high throughput sequencing, we tracked the seasonal progression of airborne Poaceae pollen biodiversity across Britain, throughout the grass allergy season. All grass genera displayed discrete, temporally restricted peaks of pollen incidence which varied with latitude, revealing that the taxonomic composition of grass pollen exposure changes substantially across the allergy season. By developing more refined aeroallergen profiling, we predict that our findings will facilitate the exploration of links between taxon-specific exposure of harmful grass pollen and disease, with concomitant socio-economic benefits.

ecology↗