Biology subjects

Gourlay, C. W.

Publications and source records attributed to Gourlay, C. W..

6 recordsLinked to original sources

bioRxiv2025

Quantifying the effects of cell death and agar density on yeast colony biofilms using an extensional flow mathematical model

We use a combination of experiments, mathematical modelling, and parameter estimation to better understand how agar density affects colony biofilm growth of the yeast species Saccharomyces cerevisiae. We obtained 15 total experimental replicates on rectangular plates filled with 0.6%, 0.8%, 1.2%, and 2.0% agar. In the experiments, we measured the horizontal expansion over time, the number of living cells, and the colony-biofilm aspect ratio. These measurements quantify the colony-biofilm size, composition, and shape, respectively. We modelled colony-biofilm expansion using a thin-film extensional-flow mathematical model. By fitting five unknown model parameters to mean experimental data, we show that nutrient uptake decreases and biofilm-substratum adhesion strength increases with an increase in agar density. Sensitivity analysis, fitting to individual replicates, and synthetic-data analysis confirmed that increased biofilm-substratum adhesion is the most consistent effect of increased agar density. This finding aligns with similar results reported for bacteria, and suggests that substratum properties are important for yeast-colony-biofilm growth.

biophysics↗

bioRxiv2025

Multiscale Analysis of Candida albicans Biofilms

Candida albicans is an opportunistic fungal pathogen of significant biomedical concern. Its ability to colonize abiotic surfaces of clinical devices -- such as catheters and airway management systems -- can result in life-threatening sepsis, especially in immunocompromised patients. A deeper understanding of C. albicans biofilm development under different environmental conditions is essential for improving antifungal treatments. In this study, we examine C. albicans biofilm formation using live fluorescence microscopy across multiple scales and modalities, and introduce new quantification approaches. High-magnification tracking of hyphal tips reveals that hyphal elongation occurs intermittently rather than continuously. Using a new automated tracking approach, we show that hyphal emergence is initially rapid and slows down after approximately two hours. At lower magnifications, area coverage across large fields of view proves to be a robust and scalable metric. It is strongly influenced by seed density and extends analysis to later stages of growth. Elevated carbon dioxide levels significantly accelerate area coverage, promoting rapid biofilm expansion. Blue light illumination reduces C. albicans growth in a dose-dependent manner. Light-sheet imaging enables the long-term capture of vertical biofilm growth, complementing widefield-based approaches. We introduce logistic model parameters to effectively quantify the dynamics of surface area growth. The methodologies presented here are well-suited for high-content screening applications aimed at identifying compounds that inhibit or suppress fungal biofilm formation under clinically relevant conditions.

microbiology↗

bioRxiv2025

Accidental and Regulated Cell Death in Yeast Colony Biofilms

The yeast species Saccharomyces cerevisiae is one of the most intensively studied organisms on the planet due to being an excellent eukaryotic model organism in molecular and cell biology. In this work, we investigate the growth and morphology of yeast colony biofilms, where proliferating yeast cells reside within a self-produced extracellular matrix. This research area has garnered significant scientific interest due to its applicability in the biological and biomedical sectors. A central feature of yeast colony biofilm expansion is cellular demise, which is onset by one of two independent mechanisms: either accidental cell death (ACD) or regulated cell death (RCD). In this article, we generalise a recently developed continuum model for the nutrient-limited growth of a yeast colony biofilm to include the effects of ACD and RCD. This new model involves a system of four coupled nonlinear reaction-diffusion equations for the yeast-cell density, the nutrient concentration, and two species of dead cells. Numerical solutions of the spatially one and two-dimensional governing equations reveal the impact that ACD and RCD have on expansion speed, morphology and cell distribution within the colony biofilm. Our results show good qualitative agreement with our own experiments.

microbiology↗

bioRxiv2020

CO2 enhances the ability of Candida albicans to form biofilms, overcome nutritional immunity and resist antifungal treatment

C. albicans is the predominant fungal pathogen of humans and frequently colonises medical devices, such as voice prosthesis, as a biofilm. It is a dimorphic yeast that can switch between yeast and hyphal forms in response to environmental cues, a property that is essential during biofilm establishment and maturation. One such cue is the elevation of CO2 levels, as observed in exhaled breath.. However, despite the clear medical relevance, the effects of CO2 on C. albicans biofilm growth has not been investigated to date. Here, we show that physiologically relevant CO2 elevation enhances each stage of the C. albicans biofilm forming process;from attachment through to maturation and dispersion.. The effects of CO2 are mediated via the Ras/cAMP/PKA signalling pathway and the central biofilm regulators Efg1, Brg1, Bcr1 and Ndt80. Biofilms grown under elevated CO2 conditions also exhibit increased azole resistance, tolerance to nutritional immunity and enhanced glucose uptake to support their rapid growth. These findings suggest that C. albicans has evolved to utilise the CO2 signal to promote biofilm formation within the host. We investigate the possibility of targeting CO2 activated processes and propose 2-Deoxyglucose as a drug that may be repurposed to prevent C. albicans biofilm formation on medical airway management implants. We thus characterise the mechanisms by which CO2 promotes C. albicans biofilm formation and suggest new approaches for future preventative strategies.

microbiology↗

bioRxiv2019

An analysis of respiratory function and mitochondrial morphology in Candida albicans

Respiratory function and mitochondrial dynamics have been well characterised in a number of cell types, including the model yeast Saccharomyces cerevisiae, but remain under-researched in fungal pathogens such as Candida albicans. An understanding of mitochondrial activity and morphology is important if we are to understand the role that this organelle plays in adaption and response to stress. Here we examine the respiratory profiles of several prominent pathogenic Candida species and present a useful GFP probe for the study of mitochondrial morphology. We examine mitochondrial morphology under a variety of conditions that Candida species may encounter within the host, such as acidic pH, respiratory and oxidative stress. The GFP probe also allowed for the visualisation of mitochondria during hyphal development, during growth following macrophage engulfment and distribution within biofilms. These data demonstrate that the mitochondrial network of C. albicans is highly responsive to both environmental conditions and developmental cues, suggesting important roles for this organelle in environmental adaption.

cell biology↗

bioRxiv2018

Alternative oxidase induction protects Candida albicans from respiratory stress and promotes hyphal growth

The human fungal pathogen Candida albicans possesses two genes expressing a cyanide-insensitive Alternative Oxidase (Aox) enzymes in addition to classical and parallel electron transfer chains (ETC). In this study, we examine the role of Aox in C. albicans under conditions of respiratory stress, which may be inflicted during its interaction with the human host or co-colonising bacteria. We find that the level of Aox expression is sufficient to modulate resistance to classical ETC inhibition under respiratory stress and are linked to gene expression changes that can promote both survival and pathogenicity. For example we demonstrate that Aox function is important for the regulation of filamentation in C. albicans and observe that cells lacking Aox function lose virulence in a zebrafish infection model. Our investigations also identify that pyocyanin, a phenazine produced by the co-colonising bacterium Pseudomonas aeruginosa, inhibits Aox-based respiration in C. albicans. These results suggest that Aox plays important roles within respiratory stress response pathways which C. albicans may utilise both as a commensal organism and as a pathogen.

microbiology↗