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Gordon, R.

Publications and source records attributed to Gordon, R..

3 recordsLinked to original sources

Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc

We can improve our understanding of biological processes through the use of computational and mathematical modeling. One such morphogenetic process (ommatidia formation in the Drosophila eye imaginal disc) provides us with an opportunity to demonstrate the power of this approach. We use a high-resolution image that catches the spatially- and temporally-dependent process of ommatidia formation in the act. This image is converted to quantitative measures and models that provide us with new information about the dynamics and geometry of this process. We approach this by addressing three computational hypotheses, and provide a publicly-available repository containing data and images for further analysis. Potential spatial patterns in the morphogenetic furrow and ommatidia are summarized, while the ommatidia cells are projected to a spherical map in order to identify higher-level spatiotemporal features. In the conclusion, we discuss the implications of our approach and findings for developmental complexity and biological theory.

developmental biology

Prosody perception in children: studying individual differences with novel brain and behavioral approaches

A sizeable literature has shown that perception of prosodic elements bolsters speech comprehension across developmental stages; recent work also suggests that variance in musical aptitude predicts individual differences in prosody perception in adults. The current study investigates brain and behavioral methods of assessing prosody perception and tests the relationship with musical rhythm perception in 35 school-aged children (age range: 5;5 to 8;0 years, M = 6;7 years, SD = 10 months; 18 females). We applied stimulus reconstruction, a technique for analyzing EEG data by fitting a temporal response function that maps the neural response back to the sensory stimulus. In doing so, we obtain a measure of neural encoding of the speech envelope in passive listening to continuous narratives. We also present a behavioral prosody assessment that requires holistic judgments of filtered speech. The results from these typically developing children revealed that individual differences in stimulus reconstruction in the delta band, indexing neural synchrony to the speech envelope, are significantly related to individual differences in behavioral measurement of prosody perception. In addition, both of these measures are moderately to strongly correlated with musical rhythm perception skills. Results support a domain-general mechanism for cognitive processing of speech and music. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=150 SRC="FIGDIR/small/281998v1_ufig1.gif" ALT="Figure 1"> View larger version (68K): org.highwire.dtl.DTLVardef@7a4ca2org.highwire.dtl.DTLVardef@13d41c6org.highwire.dtl.DTLVardef@a9652borg.highwire.dtl.DTLVardef@130eb6a_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience

DevoWorm: data-theoretical synthesis of C. elegansdevelopment.

Biological development is often described as a dynamic, emergent process. This is evident across a variety of phenomena, from the temporal organization of cell types in the embryo to compounding trends that affect large-scale differentiation. To better understand this, we propose combining quantitative investigations of biological development with theory-building techniques. This provides an alternative to the gene-centric view of development: namely, the view that developmental genes and their expression determine the complexity of the developmental phenotype. Using the model system Caenorhabditis elegans, we examine time-dependent properties of the embryonic phenotype and utilize the unique life-history properties to demonstrate how these emergent properties can be linked together by data analysis and theory-building. We also focus on embryogenetic differentiation processes, and how terminally-differentiated cells contribute to structure and function of the adult phenotype. Examining embryogenetic dynamics from 200 to 400 minutes post-fertilization provides basic quantitative information on developmental tempo and process. To summarize, theory construction techniques are summarized and proposed as a way to rigorously interpret our data. Our proposed approach to a formal data representation that can provide critical links across life-history, anatomy and function.

systems biology