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Gonzalez, N. R.

Publications and source records attributed to Gonzalez, N. R..

2 recordsLinked to original sources

Rapid, open-source, and automated quantification of the head twitch response in C57BL/6J mice using DeepLabCut and Simple Behavioral Analysis

Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT2A) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated approach for quantifying HTRs from experimental videos using the open-source machine learning-based toolkits, DeepLabCut (DLC) and Simple Behavioral Analysis (SimBA). Pose estimation DLC models were trained to predict X,Y coordinates of 13 body parts of C57BL/6J mice using historical experimental videos of HTRs induced by various psychedelic drugs. Next, a non-overlapping set of historical experimental videos was analyzed and used to train SimBA random forest behavioral classifiers to predict the presence of the HTR. The DLC+SimBA approach was then validated using a separate subset of visually scored videos. DLC+SimBA model performance was assessed at different video resolutions (50%, 25%, 12.5%) and frame rates (120, 60, 30 frames per second or fps). Our results indicate that HTRs can be quantified accurately at 50% resolution and 120 fps (precision = 95.45, recall = 95.56, F1 = 95.51) or at lower frame rates and resolutions (i.e., 50% resolution and 60 fps). The best performing DLC+SimBA model combination was deployed to evaluate the effects of bufotenine, a tryptamine derivative with uncharacterized potency and efficacy in the HTR paradigm. Interestingly, bufotenine only induced elevated HTRs (ED50 = 0.99 mg/kg, max counts = 24) when serotonin 1A receptors (5-HT1A) were pharmacologically blocked and activity at other sites of action may also impact its pharmacological effects (e.g., serotonin transporter). HTR counts for a subset of 21 videos from bufotenine experiments were strongly correlated for DLC+SimBA vs. visual scoring and semi-automated software detection methods (r = 0.98 and 0.99). Finally, the DLC+SimBA approach displayed high accuracy when compared to visual scoring of HTRs for three serotonergic psychedelic drugs with variable HTR frequencies (r = 0.99 vs. mean visual scores from 3 blinded raters). In summary, the DLC+SimBA approach represents a modular, noninvasive, and open-source method of HTR detection from experimental videos with accuracy comparable to magnetometer-based approaches and greater speed than visual scoring.

pharmacology and toxicology↗

Peanut Smut: A scientometric analysis for a pathosystem that concerns the Argentine peanut industry.

Since its first report in commercial batches in 1995, the prevalence and yield impact caused by smut disease have increased rapidly in peanut fields. At the same time, various working groups have studied this pathosystem using different approaches, contributing to the scientific knowledge of the disease. By recognizing the importance of a thorough bibliographic review and meticulous organization of information, the process of initiating new research projects becomes more effective. In light of this, the aim of this work was to provide a comprehensive scientometric analysis of the evolution of peanut smut research, spanning from its inception to the current day. For this purpose, we compiled bibliographic data about the disease and extracted information to calculate metrics. We observed that a smaller proportion of the scientific production was presented in peer-reviewed journals, the prevalent topics were epidemiology and breeding, and the collaborative endeavors were crucial for the scientific advancement in the study of this pathosystem. Additionally, the researchers with the most significant presence in the publications, the involved institutions, and the impact of the produced papers, among other trends were identified. Although there have been many scientific-technological advances in peanut smut over the years, this information is not reflected in scientific papers in peer-reviewed journals, which represents a great challenge for researchers involved in this topic. It is crucial to continue generating knowledge that contributes to the integrated management of this complex pathosystem. This will prevent further yield losses and the spread of the pathogen to new production areas.

plant biology↗