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Glushchenko, O.

Publications and source records attributed to Glushchenko, O..

2 recordsLinked to original sources

Designing a multi-serotype Dengue virus vaccine: an in silico approach to broad-spectrum immunity

Dengue virus infection represents a major global health issue, with four distinct serotypes complicating the challenge of developing a vaccine due to the need for balanced, long-lasting immunity against all serotypes. Current vaccines have limitations, including an increased risk of severe dengue in seronegative individuals and moderate efficacy, highlighting the need for more effective solutions. Our study aimed to design a multi-serotype Dengue virus vaccine using a computational approach to achieve broad-spectrum immunity. We employed advanced computational tools and algorithms to predict B-cell and T-cell epitopes, ensuring the selection of antigenic targets that provide comprehensive protection against all four serotypes. The methodology included tools for B-cell epitope prediction, tools for MHC class II and I peptide predictions, and tools for toxicity and allergenicity screening to ensure the safety of the vaccine candidates. Our results identified 21 B-cell epitopes, 15 CTL peptides, and 12 HTL peptides, validated for safety regarding toxicity and allergenic potential. The vaccine construct incorporated the adjuvant {beta}-defensin-3 and specific linkers to enhance immunogenicity and stability. Tertiary structure prediction, Ramachandran plot analysis, and stereochemical examination confirmed the stability and quality of the vaccine model. These findings demonstrate the potential of computational methods in addressing the complex challenges of Dengue virus vaccine development. Our computational approach offers a novel pathway for vaccine design, potentially accelerating the development of effective multi-serotype vaccines. This study provides a promising foundation for future research and clinical validation, marking a significant step forward in dengue vaccine development.

immunology↗

VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota

The resistance of bacterial pathogens to antibiotics is one of the most important issues of the modern health care. The human microbiota can accumulate resistance determinants and transfer them to pathogenic microflora by means of horizontal gene transfer (HGT). Thus, at the moment it is important to develop methods of prediction and monitoring of antibiotics resistance in human population. We represent the agent-based VERA model, which allows to simulate the spread of pathogen with account of possible horizontal transfer of resistance determinants from commensal microbiota community. The model considers the opportunity of residents to stay in the town or in medical institution, have wrong self-treatment, reception of several antibiotics types, transfer and accumulation of resistance determinants from a microbiota to a pathogen. In this model we have also created assessment of optimum intensity of observation of infection spread among the population. Investigating model behavior we show a number of nonlinear dependencies, including the exponential nature of dependence of total of the diseased on average resistance of a pathogen. As the model infection we considered infection with Shigella spp, though it could be applied to a wide range of other pathogens.\n\nAvailability and implementationSource code and binaries VERA and VERA.viewer are freely available for download at github.com/lpenguin/microbiota-resistome. The code is written in Java, JavaScript and R for Linux platform.

bioinformatics↗