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Giacomini, G.

Publications and source records attributed to Giacomini, G..

3 recordsLinked to original sources

Towards a General Approach for Bat Echolocation Detection and Classification

O_LIAcoustic monitoring is a scalable approach for assessing bat populations, yet automating the detection and classification of bat echolocation calls remains challenging, particularly in data-scarce regions. Although deep learning (DL) is increasingly applied to this task, most existing approaches repurpose computer-vision architectures and generate a single prediction per spectrogram clip, offering limited robustness to variable background noise and potentially constraining generality across regions and species assemblages. C_LIO_LIHere, we develop BatDetect2, an open-source DL pipeline for the joint detection and classification of bat echolocation calls. BatDetect2 builds on a 2D convolutional architecture and incorporates two targeted modifications: (i) a temporal self-attention layer designed to capture long-range structure across call sequences, and (ii) convolutional layers augmented with frequency coordinates to explicitly encode frequency information directly. We evaluate model generality using five diverse datasets from four different regions: UK, Mexico, Australia, and Brazil, and conduct ablation analyses using a UK dataset spanning 17 bat species. We further assess whether a trained model can detect echolocation calls from species absent from the training data. C_LIO_LIBatDetect2 consistently outperforms a traditional call-parameter extraction baseline across all datasets and evaluation metrics. Ablation analyses show that the inclusion of temporal self-attention yields a substantial species classification performance gain, increasing mean Average Precision (mAP) from 0.83 to 0.88, while frequency-coordinate augmentation provides no measurable benefit. When applied to novel species assemblages without retraining, model detection performance varies across datasets, with Average Precision ranging from 0.60 to 0.98. C_LIO_LIOverall, BatDetect2 demonstrates strong and transferable performance across acoustically and taxonomically diverse regions. By jointly detecting and classifying all bat calls present in each input clip, the pipeline provides a practical and extensible tool for passive acoustic monitoring. The full training pipeline and a pretrained UK model are released through the open-source Python package batdetect2, enabling practitioners to develop and deploy models using their own data. C_LI

ecology↗

Consistent individual positions within roosts in Spix's disc-winged bats

Individuals within both moving and stationary groups arrange themselves in a predictable manner; for example, some individuals are consistently found at the front of the group or in the periphery and others in the center. Each position may be associated with various costs, such as greater exposure to predators, and benefits, such as preferential access to food. In social bats, we would expect a similar consistent arrangement for groups at roost-sites, which is where these mammals spend the largest portion of their lives. Here we study the relative position of individuals within a roost-site and establish if sex, age, and vocal behavior are associated with a given position. We focus on the highly cohesive and mobile social groups found in Spixs disc-winged bats (Thyroptera tricolor) given this species use of a tubular roosting structure that forces individuals to be arranged linearly within its internal space. We obtained high scores for linearity measures, particularly for the top and bottom positions, indicating that bats position themselves in a predictable way despite constant roost-switching. We also found that sex and age were associated with the use of certain positions within the roost; for example, males and subadults tend to occupy the top part (near the roosts entrance) more often than expected by chance. Our results demonstrate, for the first time, that bats are capable of maintaining a consistent and predictable position within their roosts despite having to relocate daily, and that there is a link between individual traits and position preferences.

ecology↗

Aberrant DNA repair is a vulnerability in histone H3.3-mutant brain tumors

Pediatric high-grade gliomas (pHGG) are devastating and incurable brain tumors with recurrent mutations in histone H3.3. These mutations promote oncogenesis by dysregulating gene expression through alterations of histone modifications. We identify aberrant DNA repair as an independent oncogenic mechanism, which fosters genome instability and tumor cell growth in H3.3 mutant pHGG, thus opening new therapeutic options. The two most frequent H3.3 mutations in pHGG, K27M and G34R, drive aberrant repair of replication-associated damage by non-homologous end joining (NHEJ). Aberrant NHEJ is mediated by the DNA repair enzyme Polynucleotide Kinase 3-Phosphatase (PNKP), which shows increased association with mutant H3.3 at damaged replication forks. PNKP sustains the proliferation of cells bearing H3.3 mutations, thus conferring a molecular vulnerability, specific to mutant cells, with potential for therapeutic targeting.

cancer biology↗