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Ghosh, A.

Publications and source records attributed to Ghosh, A..

At least 73 records · Page 4Linked to original sources

Tracking Chemotherapy-Induced Oxidative Stressin Glioblastoma Cells Using NV-Based QuantumSensors

Glioblastoma (GBM) is a highly aggressive cancer with poor prognosis despite temozolomide(TMZ) treatment. TMZ induces oxidative stress, causing persistent redox alterations. We report the first use of nitrogen-vacancy centers in nanodiamonds as quantum sensors for T1 relaxometry in fixed GBM cells, detecting stable paramagnetic signatures linked to chemotherapy-induced persistent oxidative damage. U87-MG cells treated with TMZ show dose-dependent T1 shortening, consistent with conventional ROS fluorescence assays. TBHP studies confirm that the T1 response reflects accumulated redox adducts. Measurements remain robust across fixation and permeabilization protocols. Since drug-resistant GBM cells preserve antioxidant signatures, unchanged T1 times after treatment may indicate early resistance phenotypes. This fixed-tissue compatible readout could stratify patient response, guide adaptive therapy, and support biopsy-based diagnostics and post-treatment drug analysis in routinely preserved clinical specimens enabling retrospective studies and better outcomes for future personalized oncology decision making pathways.

biophysics↗

Turmeric Phyto-nanoparticle: enhanced cellular bioavailability and anti-inflammatory effect in human monocyte / macrophage model

The poor bioavailability of curcuminoids remains a major challenge to therapeutic use. This is largely due to their hydrophobicity, poor absorption, rapid metabolism, and short circulating half-life--limitations that are now being addressed through advances in nano- and micro-emulsion technologies. Curcuminoids and other water-insoluble phyto-polyphenols offer significant putative health benefits as anti-inflammatory, antioxidant, anticancer, radioprotective, and neuroprotective agents. Conventional emulsion-based delivery systems, such as liposomes, micelles, or solid lipid particles, rely on various emulsifying surfactants and/or excipients, some of which may themselves pose health risks. Here, we establish a novel class of all-natural, additive-free, oil-free, and emulsion-free Turmeric Phyto-NanoParticles (TPNPs) formulated directly from turmeric rhizomes and tested in a human monocyte/macrophage cell model to assess bioavailability kinetics and the efficacy of antioxidant and anti-inflammatory potential. TPNPs are enriched with curcuminoids (24.85% by mass), form a homogeneous nanoparticle distribution, exhibit higher antioxidant capacity, and demonstrate significantly improved cellular uptake in both monocytes and macrophages compared to conventionally purified curcuminoids. Favourable cellular pharmacodynamic anti-inflammatory effect of TPNPs was shown by increased levels of the cytoprotective enzyme heme oxygenase-1 (HMOX1), and a more effective reduction in lipopolysaccharide (LPS)-induced tumor necrosis factor (TNF) secretion compared to conventional curcuminoids. TPNPs could thus serve as a stable, non-synthetic, excipient-free formulation for safe and effective delivery of curcuminoids by nanocarriers for inflammatory conditions.

pharmacology and toxicology↗

Spatiotemporal dynamics of questing activity by four tick species in the central Great Plains

In this study, we explore a suite of new ecological niche modeling approaches to illuminate the distributional potential and distributional dynamics of questing individuals of four tick species in the central Great Plains region. Specifically, we improve on typical approaches in distributional ecology by (1) assigning time-specific environmental values to sampling events so that repeated sampling at the same points yields additional information, (2) using both positive and negative records of the species as inputs in model development, and (3) constraining model response shapes in models to resemble the shapes of fundamental ecological niches. Model outcomes demonstrate both seasonal dynamics and differences between species in terms of the geographic potential of questing behavior by Great Plains tick species. These improved approaches in distributional ecology have considerable potential to enrich distributional understanding of vector species distributions.

ecology↗

From sequence to signature: Uncovering multiscale AMR features across bacterial pathogens with supervised machine learning

Since the clinical introduction of antibiotics in the 1940s, antimicrobial resistance (AMR) has become an increasingly dire threat to global public health. Pathogens acquire AMR much faster than we discover new drugs (antibiotics), warranting innovative methods to better understand its molecular underpinnings. Traditional approaches for detecting AMR in novel bacterial strains are time-consuming and labor-intensive. However, advances in sequencing technology offer a plethora of bacterial genome data, and computational approaches like machine learning (ML) provide an optimistic scope for in silico AMR prediction. Here, we introduce a comprehensive multiscale ML approach to predict AMR phenotypes and identify AMR molecular features associated with a single drug or drug family, stratified by time and geographical locations. As a case study, we focus on a subset of the World Health Organizations Bacterial Priority Pathogens, the frequently drug-resistant and nosocomial ESKAPE pathogens: Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species. We started with sequenced genomes with lab-derived AMR phenotypes, constructed pangenomes, clustered gene and protein sequences, and extracted protein domains to generate pangenomic features across molecular scales. To uncover the molecular mechanisms behind drug-/drug class-specific resistance, we trained logistic regression ML models on our datasets. These yielded ranked lists of AMR-associated genes, proteins, and domains. In addition to recapitulating known AMR features, our models identified novel candidates for experimental validation. The models were performant across molecular scales, data types, and drugs while achieving a median normalized Matthews correlation coefficient of 0.89. Prediction performance showed resilience even when evaluated on geographical and temporal holdouts. We also evaluated model generalizability and cross-resistance across the drug-/drug class-specific models cross-tested on other available drug-/drug class genomes. Finally, we uncovered multiple drug class resistance features using multiclass and multilabel models. Our holistic approach promises reliable prediction of existing and developing resistance in newly sequenced pathogen genomes, while pinpointing the mechanistic molecular contributors of AMR. All our models and results are available at our interactive web app, https://jravilab.org/amr.

bioinformatics↗

Fine-grained alignment of cortical signals to smartphone touchscreen temporal pattern

Smartphone touchscreen interactions are remarkably varied, with each tap and swipe shaped by a distinct combination of cognitive, affective, and environmental factors. One possibility is that the brain plans and processes each interaction anew. Alternatively, the brain may reduce this diversity, processing many distinct interactions through a shared set of recurring neural patterns. The intervals between successive interactions offer one way to detect such shared structure: when interactions are organized by their interval statistics, they reveal regularities that suggest common underlying processes. To test whether these behavioral regularities are mirrored by recurring neural patterns, we recorded EEG during naturalistic smartphone use (n = 53 participants, > 130,000 taps). We placed each interaction on a two-dimensional behavioral map spanning 100 ms to 100 s, defined by its two preceding intervals, and extracted recurring neural patterns time-locked to the touchscreen. Interactions with similar interval context evoked similar neural responses, forming clusters across the behavioral map. Clusters were more pronounced before the interaction than after, suggesting they support upcoming actions. This low-dimensional organization may allow the brain to process diverse interactions through a shared, reusable set of recurring neural patterns rather than planning each anew.

neuroscience↗

IntAct-U-ExM: Ultrastructure Expansion microscopy of actin networks via an internally-tagged actin

Expansion microscopy (ExM) has revolutionized super-resolution imaging in cell biology due to its simple and inexpensive workflow. The use of ExM has revealed several novel insights into the nanoscale architectures of cellular protein complexes, especially the microtubule cytoskeleton in model and non-model systems. Despite tremendous progress in expansion microscopy protocols that preserve cellular ultrastructure (U-ExM), compatible probes for imaging actin isoforms with U-ExM are still lacking and have hindered the study of diverse actin isoforms and networks across model systems. Here, we use IntAct, an internally tagged actin that incorporates into cellular actin networks, to develop and optimize U-ExM of diverse actin network types in both yeast and mammalian cells. Using expression of ALFA-tagged IntAct variants in yeast and mammalian cells, we show robust visualization of actin patches, cables, and rings in yeast and diverse actin networks such as actin cortex, stress fibers, filopodia, lamellipodium in mammalian cells at improved resolution. We also detect transient nuclear actin filaments using IntAct-U-ExM underscoring the advantages offered by our approach to image understudied actin structures. Overall, we demonstrate the effectiveness of IntAct-U-ExM for performing super-resolution imaging of various actin structures in an isoform-specific manner and highlight the potential of IntAct to study the nanoscale organization of diverse actin cytoskeletal networks across species. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=76 SRC="FIGDIR/small/654030v1_ufig1.gif" ALT="Figure 1"> View larger version (31K): org.highwire.dtl.DTLVardef@169cd82org.highwire.dtl.DTLVardef@1334af3org.highwire.dtl.DTLVardef@7d9d43org.highwire.dtl.DTLVardef@dfc50b_HPS_FORMAT_FIGEXP M_FIG C_FIG

cell biology↗

High-Throughput Machine Learning-Aided Antibody Discovery for Cell Surface Antigens

Machine learning (ML) has the potential to revolutionize antibody design and selection, but its success depends on access to extensive, well-curated datasets of antibody-antigen interactions. To address this need, we developed a synthetic Fab yeast display library optimized for seamless ML integration, focusing on sequence diversity within the CDRH3 loop. The library incorporates key sequence features derived from human B cell repertoires essential for efficient antibody generation captured in a compact antigen recognition module (ARM) format. Built using the VH1-69 heavy chain and four light chains, the library was evaluated against ten human and murine cell surface antigens, including PD-L1, TIGIT, and ROBO1. This approach yielded hundreds of antibodies with robust biophysical properties, validated for functional performance in flow cytometry and immunohistochemistry. Furthermore, ML analysis identified additional antibodies for ROBO2 and PD-L2 from the aggregate sequencing data, demonstrating utility for hybrid in silico and experimental workflows. We provide a publicly accessible dataset comprising more than 68,000 Fab sequences and 486 characterized antibodies. This study establishes an ML-compatible framework designed to accelerate and streamline antibody discovery and development.

biophysics↗

Testing the gearbox hypothesis for insect flight control

Sustained flight in flies requires wing movements at frequencies ranging between 100-1000 Hz, powered by asynchronous flight muscles whose contraction rate exceeds direct neural stimulation. These muscles attach to the thoracic walls in an indirect flight muscle (IFM) configuration, generating thoracic deformations that drive wing flapping, while smaller steering muscles adjust wing kinematics stroke-by-stroke. The wings articulate with the thorax via the wing hinge, in which the radial stop (RS) and a grooved pleural wing process (PWP) interact to form a mechanical "gearbox" system, proposed to modulate wingbeat amplitude during maneuvering. Supporting this gearbox hypothesis, previous studies observed close RS-PWP interactions during fictive turns in tethered flies. An alternative, though not exclusive, hypothesis suggests that steering muscles govern wingbeat amplitude modulation. However, the gearbox hypothesis had not been rigorously tested in freely flying insects. Here, we first assessed the morphological diversity of the RS-PWP-Pterale C complex across Diptera using scanning electron microscopy and found substantial variation, particularly in PWP morphology. We next tested gearbox function by bilaterally ablating the PWP in freely flying houseflies (Musca domestica), which were released into an L-shaped arena requiring 90{degrees} yaw turns. Kinematic analyses revealed no significant differences between control and PWP-ablated flies across various wing and body parameters during yaw turns. Both groups could differentially modulate wingbeat amplitude during turns, a key mechanism for yaw torque generation. These findings indicate that the PWP is not essential for wingbeat amplitude modulation, and suggest that steering muscles may primarily control amplitude control during manuevers. Our results challenge the gearbox hypothesis and underscore the flexibility of the dipteran flight control system.

zoology↗

Lipid Mediated Formation of Antiparallel Aggregates in Cerebral Amyloid Angiopathy

Cerebral amyloid angiopathy (CAA) is a cerebrovascular disorder marked by amyloid-{beta} (A{beta}) deposition in blood vessel walls, leading to hemorrhage and recurring stroke. Despite significant overlap with Alzheimers disease (AD) through shared A{beta} pathology, the specific structural characteristics of A{beta} aggregates in CAA and their variations between stages of disease severity are yet to be fully understood. Traditional approaches relying on brain-derived fibrils can potentially overlook the polymorphic heterogeneity and chemical associations within vascular amyloids. This study utilizes sub-diffraction, label-free mid-infrared photothermal (MIP) spectroscopic imaging to directly probe the chemical structure and heterogeneity of vascular amyloid aggregates within human brain tissues across different CAA stages. Our results demonstrate a clear increase in {beta}-sheet content within vascular A{beta} deposits corresponding to disease progression. Crucially, we identify a significant presence of antiparallel {beta}-sheet structures, particularly prevalent in moderate/severe CAA. The abundance of antiparallel structures correlates strongly with co-localized lipids, implicating a lipid-mediated aggregation mechanism. We substantiate the ex-vivo observations using nanoscale AFM-IR spectroscopy and demonstrate that A{beta}40 aggregated in vitro with brain-derived lipids adopts antiparallel structural distributions mirroring those found in CAA vascular lesions. This work provides critical insights into the structural distributions of A{beta} aggregates in CAA, highlighting the presence of polymorphs typically associated with transient intermediates, which may lead to alternate mechanisms for neurotoxicity.

neuroscience↗

Tubulin hyperacetylation drives HMGB1 nuclear exit via the ROS-PARP1 axis leading to rotenone-induced G2/M Arrest

Rotenone, a lipophilic pesticide, is strongly linked to dopaminergic neuronal loss in Parkinsons disease (PD), primarily through mitochondrial complex I inhibition. While rotenone induces G2/M arrest in dividing cells, the underlying molecular events remain unclear. We identify HMGB1 as a key player in this process. HMGB1, known for its roles in genomic integrity and inflammation, exits the nucleus during rotenone-induced G2/M arrest, whereas its nuclear retention protects against mitotic DNA damage. We further reveal that tubulin hyperacetylation precedes HMGB1 nuclear release. Notably, reducing tubulin acetyltransferase lowers mitochondrial ROS (mtROS), preventing HMGB1 nuclear exit and mitotic DNA damage. Additionally, inhibiting PARP1 hyperactivation with PJ34 blocks HMGB1 exit and prevents G2/M arrest. These findings suggest that ROS-induced DNA damage elevates PARP1 activity, promoting HMGB1 nuclear exit and interfering with DNA repair. This tubulin acetylation/mtROS/HMGB1 axis may underlie rotenone-induced neurotoxicity, contributing to dopaminergic neuron vulnerability in PD and offering potential neuroprotective targets.

cell biology↗

In vitro and in vivo synergy of Vancomycin and β-lactams against drug-resistant Mycobacterium tuberculosis and Non-tuberculous mycobacteria

The unabated increase in antimicrobial resistance has underlined the importance of identifying novel drug combinations which eliminate infections more potently and likely reduce the emergence of resistance. In this context, we have identified Vancomycin and many {beta}-lactams as being potently active against drug-resistant Mycobacterium tuberculosis and non-tuberculous mycobacteria including M. abscessus, emerging as pathogens of concern owing to their inherent drug resistance profile. In this study, we have identified combinations of Vancomycin, a glycopeptide and {beta}-lactams, especially Ceftriaxone, Ceftazidime and Meropenem, in the presence or absence of Sulbactam, a {beta}- lactamase inhibitor, as possessing potent antimicrobial activity against several drug-resistant mycobacterial strains. The combination of Vancomycin and {beta}-lactams exhibited potent bactericidal activity and reduced the bacterial load better than either drug alone. The molecular basis of synergy was mediated by increase in permeability of mycobacterial cell as demonstrated by ethidium bromide assay. In the murine model of mycobacterial infection, synergistic combination of Vancomycin and {beta}-lactams outperformed clinically utilized drugs including Isoniazid, Rifampicin and Ethambutol against M. tuberculosis and Amikacin, Clarithromycin against M. abscessus. The combinations caused a significant reduction in bacterial load in various organs in M. tuberculosis and M. abscessus infected mice. Thus, the synergistic combination of Vancomycin and {beta}-lactams could potentially be utilized for treatment of recalcitrant mycobacterial infection especially those caused due to drug-resistant pathogens.

microbiology↗

Understanding the mechanism of facilitation in hoverfly TSDNs

Many animals use visual motion cues to track and pursue small, fast-moving targets, such as prey or conspecifics. In target-pursuing insects, including dragonflies and hoverflies, Small Target Motion Detector (STMD) neurons are found in the optic lobes and are believed to be presynaptic to Target Selective Descending Neurons (TSDNs) that project to motor command centres. While STMDs respond robustly to target motion - even when displayed against moving backgrounds - TSDN target responses are modulated by background motion. Depending on whether the background motion is syn- or contra-directional to the target motion, the response of the TSDNs is either suppressed or facilitated (amplified). This suggests that TSDNs not only receive input from STMDs but also from neurons sensitive to background motion, but this neural circuit is not clearly understood. To explore the underlying neural mechanisms, we developed three candidate TSDN circuit models - which combine input from bio-plausible STMDs and optic flow-sensitive Lobula Plate Tangential Cells (LPTCs) in different ways - and fitted them to published electrophysiology data from hoverfly TSDNs. We then tested the best-fitting models against new electrophysiological data using different background patterns. We found that the overall best model suggests simple inhibition from LPTCs with the same preferred direction as the STMDs feeding into the TSDN. This parsimonious mechanism can explain the facilitation and suppression of TSDN responses to small targets, may inform similar studies in other animals and open new avenues for bio-inspired robotics. Author summaryMany human sports, including tennis, football, and basketball, rely on the ability to visually detect and respond to the motion of a small, rapidly moving object. Indeed, some sports stars seem to have an uncanny ability to predict the future location of a ball. Similarly, many animals also need to detect the motion of small objects, as these may represent an approaching predator, prey, or a conspecific that needs to be avoided or pursued. Interestingly, while the detection of small visual targets is computationally a hard problem, insects, which have small brains with very modest power requirements, appear to solve this effortlessly. Thus, understanding how target detection is performed in insects can open up avenues for bio-inspired robotics. Male hoverflies naturally engage in complex pursuit behavior, and since they have specialised neurons for target tracking, hoverflies are ideal for understanding the underlying neural circuitry. Here, we combine neural recordings from hoverflies with computational modelling to show how neurons that respond selectively to target motion are combined with neurons that respond to widefield optic-flow to generate behaviourally relevant sensorimotor responses. Importantly, our model does not involve learning and hence suggests that these behaviours can be innate.

neuroscience↗

Single-cell RNA sequencing of peripheral blood defines two immunological subtypes of Sjögren's disease

Sjogrens disease (SjD) is a heterogeneous autoimmune disorder with significant clinical and molecular diversity. While anti-SSA antibodies serve as a hallmark serological biomarker, nearly half of patients lack them, raising fundamental questions about distinct pathogenic mechanisms. To address this, we performed single-cell RNA sequencing with surface protein profiling on 1.5 million PBMCs from 333 participants in the Sjogrens International Collaborative Clinical Alliance cohort, comparing those with and without SjD and stratifying them by anti-SSA status. Our analysis identified two immunologically distinct subtypes of SjD, with SSA-positive patients exhibiting a dominant and persistent IFN-I signature, profoundly impacting immune cell maturation. Notably, transitional B cells were disproportionately affected, displaying signs of premature maturation, reduced BCR diversity, and shorter CDR3 regions, reinforced interactions with proinflammatory cells, thereby fostering an environment conducive to autoreactivity. By contrast, SSA-negative SjD participants lacked an upregulated IFN-I signature, challenging prevailing pathogenic models and suggesting alternative immune dysregulation pathways. These findings support a two-disease model of SjD and highlight transitional B cells as both a key biomarker and a potential therapeutic target. Targeting IFN-I signaling and transitional B cell maturation may represent a novel therapeutic avenue to modulate immune dysregulation and prevent autoreactivity in SjD.

genomics↗

Rationally Designed PKD1 Activator Protects Against Neurodegeneration in Pre-clinical Models of Parkinson's Disease

Oxidative stress leads to degeneration in Parkinsons disease (PD). The key signal transduction and regulatory networks that are involved during this degenerative process in PD are currently being investigated for novel neuro-protective strategies. We recently discovered that the activation of Protein Kinase D1 (PKD1) acts as a novel compensatory mechanism in PD models and positive modulation of PKD1 can be a therapeutic strategy. Therefore, the purpose of the present study was to take a translational approach by developing a PKD1 activator and characterizing the protective function in pre-clinical models of PD. Positive genetic modulation of PKD1 by overexpression of constitutively active PKD1 protected against MPP+ induced dopaminergic neurotoxicity. Pharmacological activation by Rosiglitazone protected, whereas inhibition by kb NB 142-70 exacerbated against MPP+ and 6-OHDA toxicity in cell culture PD models. Importantly, peptides were rationally designed and screened for their ability to activate PKD1 using our screening methods. Peptide AK-P4 was identified to activate PKD1 specifically and protect against MPP+ and 6-OHDA in both N27 cells and primary mesencephalic neurons. Further AK-P4 tagged with TAT sequence (AK-P4T) delivered using intra-venous injections activated PKD1 in mice. The neuro-protective effects of AK-P4T were tested using the sub-chronic MPTP mice model. Co-treatment with AK-P4T significantly restored the neurotransmitter levels and the behavioral and locomotory activities of the MPTP mouse model of PD. Collectively, our results demonstrate that rationally designed PKD1 activator peptide AK-P4T positively modulated PKD1 and protected against neurodegeneration in the pre-clinical models of PD. Our results suggest that positive modulation of the PKD1 using AK-P4T shows promise as a potential therapeutic agent against PD.

neuroscience↗

Optochemical control over mRNA translation by photocaged phosphorodiamidate morpholino oligonucleotides in vivo

A key regulatory step in protein synthesis is the initiation of mRNA translation. We developed an efficient, robust, and broadly applicable system for light-induced protein translation to control the production of proteins of interest and study their function. The method is based on the displacement of a single type of antisense morpholino from RNA by the uncaged guanidinium-linked morpholino (GMO)-phosphorodiamidate morpholino oligonucleotide (PMO) chimera upon UV irradiation. The GMO-PMO chimera designed here is cell-permeable and the GMO part can be produced employing a new mercury-free approach compatible with the synthesis on solid support. We demonstrate the function of this novel optochemical approach in live embryos by inducing, at desired times and locations, the expression of proteins that label specific cells, ablate tissue regions, and affect embryonic development. Together, our results demonstrate that the cell-permeable GMO-PMO chimera offers a unique strategy for controlling the function of mRNAs of interest. This method allows for the production of proteins at specific times and positions within live organisms, facilitating numerous applications in biomedical research and therapy.

developmental biology↗

Synaptotoxic forms of amyloid-b and a-synuclein act through a common pathway.

It has been suggested that -synuclein (Syn), a major player in Parkinsons disease (PD), plays a role in Alzheimers disease (AD). Several reports have also concluded that Syn and amyloid-{beta} (A{beta}) are mechanistically linked, although how is unclear. Synapse loss is an early feature in both PD and AD and held to be the driver of both diseases. We have previously uncovered a signalling pathway required for A{beta}-driven dendritic spine loss - a non-canonical branch of Wnt signalling known as the Wnt/Planar Cell Polarity (Wnt/PCP) pathway. We asked if a synaptotoxic form of Syn known to impact dendritic spines, the A53T autosomal dominant PD mutant form of Syn (A53T-Syn), might act on synapses through the same pathway. Here, by blocking all Wnt activity with the porcupine inhibitor IWP2, we show that A53T-Syn-driven spine loss is Wnt-dependent. By silencing Daam1, which is unique to Wnt/PCP, we show that A53T-Syn spine loss is Daam1-dependent. Finally, using the pan-ROCK inhibitor fasudil indicates the mechanism also involves ROCK1/2, which Daam1 signals to via RhoA to modulate actin cytoskeletal dynamics within dendritic spines. Together, these observations indicate that A53T-Syn-driven spine loss involves the Wnt/PCP pathway, the same pathway that mediates A{beta} synaptotoxicity. This indicates that A{beta} and Syn are mechanistically connected and that a common pathway is responsible for synapse loss in AD and PD. It also begins to explain why this group of neurodegenerative diseases have many features in common and suggests that drugs which target Wnt/PCP could be of benefit for both AD and PD.

neuroscience↗

Bacterial IF2's N-terminal IDR drives cold-induced phase separation and promotes fitness during cold stress

Translation initiation factor 2 (IF2) plays an essential role in bacterial cells by delivering the fMet-tRNAfMet to the ribosome pre-initiation complex. IF2 is known to have an N-terminal disordered region which is present across bacterial species, yet its function is not fully understood. Deletion of the IDR in E. coli showed no phenotypes at normal growth temperature (37{degrees}C); however, this IDR was found to be required for growth at cold temperatures (15{degrees}C). Since large IDRs can drive phase separation of various RNA binding proteins into biomolecular condensates, we investigated whether E. coli IF2 could phase separate. We discovered that IF2s N-terminal IDR drives phase separation in E. coli and C. crescentus, suggesting that IF2 condensation is a conserved property. Finally, using E. coli, we found that the IDR strongly drives phase separation in the cold, suggesting IF2 condensates promote fitness during cold stress. HighlightsO_LIIF2s IDR promotes phase separation with RNA. C_LIO_LICold temperature promotes IF2 condensation with RNA. C_LIO_LIIF2s IDR promotes fitness during cold shock. C_LI

microbiology↗

Attenuated adenosine mediated immune-dampening increases natural killer cell activity in early age-related macular degeneration

Non-exudative age-related macular degeneration (AMD) involves retinal pigment epithelium (RPE) dysfunction and has been linked to altered intraocular immunity. Our investigation focuses on immune cell subsets and inflammation-associated factors in the eyes with early and intermediate AMD. We observed elevated levels of activated natural killer (NK) cells and interferon-{gamma}, concurrent with reduced myeloid-derived suppressor cells (MDSCs) and adenosine in AMD eyes. Aqueous humor from AMD patients had diminished ability to dampen NK cell activation, an effect rescued by adenosine supplementation. The Cryba1 cKO mouse model recapitulated these immune alterations, and single-cell RNA-sequencing identified NK cell-related genes and NK cell-RPE interactions. Co-culture of activated NK cells with RPE cells induced barrier dysfunction and Gasdermin-E driven pyroptosis providing a functional link relevant to AMD. These findings suggest a double-hit model where elevated immune activation and loss of immune dampening mechanisms drive AMD progression. Resetting the intraocular immune balance may be a promising therapeutic strategy for managing early and intermediate AMD. O_FIG O_LINKSMALLFIG WIDTH=198 HEIGHT=200 SRC="FIGDIR/small/634301v2_ufig1.gif" ALT="Figure 1"> View larger version (39K): org.highwire.dtl.DTLVardef@1516bfaorg.highwire.dtl.DTLVardef@87f505org.highwire.dtl.DTLVardef@1e725caorg.highwire.dtl.DTLVardef@622717_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOGraphical abstractC_FLOATNO Illustra tion of pro posed mechanism underlying NK cell-RPE interaction in early AMD pathogenesis. Dysregulated NK cell communicate s with stressed RPE in early AMD immunopathology. Aberrant AMD aqueous humor and retina shows increased NK cells and NK effector molecules like IFN{gamma} with reduced MDSC and adenosine in human subjects, don or eye and animal model. Activated NK cells interaction with RPE causes dysfunction and pyroptotic cell death via Gasdermin-E pathway in AMD.. Created with BioRender.com C_FIG

immunology↗